RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 ZXDAP98168 799 aa12.02□□□□□ -0.49
CCDC88A-204ENST00000413716 RPS4Y2Q8TD47 263 aa12.02□□□□□ -0.49
CCDC88A-204ENST00000413716 FOXC2Q99958 501 aa12.02□□□□□ -0.49
CCDC88A-204ENST00000413716 IL2RAP01589 272 aa12.02□□□□□ -0.49
CCDC88A-204ENST00000413716 IGHV3-64DA0A0J9YX35 117 aa12.02□□□□□ -0.49
CCDC88A-204ENST00000413716 T-ENOLP0DO92 83 aa12.02□□□□□ -0.49
CCDC88A-204ENST00000413716 HLA-DRB3P79483 266 aa12.02□□□□□ -0.49
CCDC88A-204ENST00000413716 COX20Q5RI15 118 aa12.02□□□□□ -0.49
CCDC88A-204ENST00000413716 SLC36A1Q7Z2H8 476 aa12.02□□□□□ -0.49
CCDC88A-204ENST00000413716 DEFB132Q7Z7B7 95 aa12.02□□□□□ -0.49
CCDC88A-204ENST00000413716 FAM74A7A6NL05 159 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 SLC2A10O95528 541 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 C1QTNF6Q9BXI9 259 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 TNFRSF1AP19438 455 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 GLDNQ6ZMI3 551 aaPredicted RBP12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 HSD11B1LQ7Z5J1 315 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 TMEM25Q86YD3 366 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 SYT8Q8NBV8 401 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 DYNLRB2Q8TF09 96 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 FUT9Q9Y231 359 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 SHPRHQ149N8 1683 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 ID1P41134 155 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 NKAIN2Q5VXU1 208 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 GPRIN1Q7Z2K8 1008 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 ZDHHC22Q8N966 263 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 C7orf72A4D263 438 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 WDR13Q9H1Z4 485 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 ITGB4P16144 1822 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 EIF4E2O60573 245 aaKnown RBP12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 SLC25A26Q70HW3 274 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 ARRDC1Q8N5I2 433 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 GUCD1Q96NT3 240 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 A0A096LPE4 126 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 A0A1W2PPZ6 126 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 TNFSF11O14788 317 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 EVX1P49640 407 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 GBGT1Q8N5D6 347 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 NDUFB3O43676 98 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 PAFAH1B2P68402 229 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 CLPPQ16740 277 aaPredicted RBP12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 RGS7BPQ6MZT1 257 aaPredicted RBP12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 STAC2Q6ZMT1 411 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 COA4Q9NYJ1 87 aa12.01□□□□□ -0.49
CCDC88A-204ENST00000413716 A0A1B0GX78 115 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 TLCD2A6NGC4 264 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 PRKRAO75569 313 aaKnown RBP12□□□□□ -0.49
CCDC88A-204ENST00000413716 ZNF121P58317 390 aaPredicted RBP12□□□□□ -0.49
CCDC88A-204ENST00000413716 SPANXN1Q5VSR9 72 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 TMEM38BQ9NVV0 291 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 PDCD11Q14690 1871 aaKnown RBP12□□□□□ -0.49
CCDC88A-204ENST00000413716 ALOX12BO75342 701 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 HOXC13P31276 330 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 DCTDP32321 178 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 RELQ04864 619 aaPredicted RBP12□□□□□ -0.49
CCDC88A-204ENST00000413716 NCMAPQ5T1S8 102 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 DHRS4L2Q6PKH6 230 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 PHIPQ8WWQ0 1821 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 M0R082 166 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 TEX30Q5JUR7 227 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 SPACA5Q96QH8 159 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 S1PR5Q9H228 398 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 CEP250Q9BV73 2442 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 H3BNC9 293 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 IL4P05112 153 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 CDCA4Q9BXL8 241 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 CDC42EP3Q9UKI2 254 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 FIGNL2A6NMB9 653 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 FCGR3AP08637 254 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 ALKBH6Q3KRA9 238 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 LIPNQ5VXI9 398 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 GLIPR2Q9H4G4 154 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 LYRM4Q9HD34 91 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 CD68P34810 354 aaPredicted RBP12□□□□□ -0.49
CCDC88A-204ENST00000413716 CCR2P41597 374 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 HTRA3P83110 453 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 RASL12Q9NYN1 266 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 DSCR3O14972 297 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 PLAURQ03405 335 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 FUT7Q11130 342 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 PRSS50Q9UI38 385 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 PTPRZ1P23471 2315 aaPredicted RBP12□□□□□ -0.49
CCDC88A-204ENST00000413716 MBLAC1A4D2B0 266 aaPredicted RBP12□□□□□ -0.49
CCDC88A-204ENST00000413716 SRP14P37108 136 aaKnown RBP12□□□□□ -0.49
CCDC88A-204ENST00000413716 TCL1AP56279 114 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 VSIG4Q9Y279 399 aa12□□□□□ -0.49
CCDC88A-204ENST00000413716 TAF1P21675 1872 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 ABCA7Q8IZY2 2146 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 SLC37A1P57057 533 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 MICBQ29980 383 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 AWAT1Q58HT5 328 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 SMIM4Q8WVI0 70 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 MYOZ1Q9NP98 299 aaPredicted RBP11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 ZNF749O43361 778 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 FAM53AQ6NSI3 398 aaPredicted RBP11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 OR8B3Q8NGG8 313 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 MRPL16Q9NX20 251 aaKnown RBP11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 MPDU1O75352 247 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 FAHP16930 419 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 CLDN15P56746 228 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 TMEM215Q68D42 235 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms