RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 GHSRQ92847 366 aa18.04■□□□□ 0.48
CLN3-207ENST00000395653 PGLYRP3Q96LB9 341 aa18.04■□□□□ 0.48
CLN3-207ENST00000395653 HES4Q9HCC6 221 aa18.04■□□□□ 0.48
CLN3-207ENST00000395653 OPN4Q9UHM6 478 aa18.04■□□□□ 0.48
CLN3-207ENST00000395653 MXRA5Q9NR99 2828 aa18.03■□□□□ 0.48
CLN3-207ENST00000395653 KIR2DS1A0A191URI9 304 aa18.03■□□□□ 0.48
CLN3-207ENST00000395653 GPR37O15354 613 aa18.03■□□□□ 0.48
CLN3-207ENST00000395653 SULT1B1O43704 296 aa18.03■□□□□ 0.48
CLN3-207ENST00000395653 FCN3O75636 299 aa18.03■□□□□ 0.48
CLN3-207ENST00000395653 NXPH2O95156 264 aa18.03■□□□□ 0.48
CLN3-207ENST00000395653 PSG2P11465 335 aa18.03■□□□□ 0.48
CLN3-207ENST00000395653 CRHBPP24387 322 aa18.03■□□□□ 0.48
CLN3-207ENST00000395653 SOX2P48431 317 aa18.03■□□□□ 0.48
CLN3-207ENST00000395653 IL13RA1P78552 427 aa18.03■□□□□ 0.48
CLN3-207ENST00000395653 BDH1Q02338 343 aa18.03■□□□□ 0.48
CLN3-207ENST00000395653 PAX8Q06710 450 aa18.03■□□□□ 0.48
CLN3-207ENST00000395653 YIF1BQ5BJH7 314 aa18.03■□□□□ 0.48
CLN3-207ENST00000395653 FAM216BQ8N7L0 139 aa18.03■□□□□ 0.48
CLN3-207ENST00000395653 ZFP41Q8N8Y5 198 aa18.03■□□□□ 0.48
CLN3-207ENST00000395653 MED30Q96HR3 178 aa18.03■□□□□ 0.48
CLN3-207ENST00000395653 GAFA1Q96PS6 74 aa18.03■□□□□ 0.48
CLN3-207ENST00000395653 MRI1Q9BV20 369 aa18.03■□□□□ 0.48
CLN3-207ENST00000395653 RASSF4Q9H2L5 321 aa18.03■□□□□ 0.48
CLN3-207ENST00000395653 ZNF222Q9UK12 451 aa18.03■□□□□ 0.48
CLN3-207ENST00000395653 WNK2Q9Y3S1 2297 aa18.03■□□□□ 0.48
CLN3-207ENST00000395653 IGKV1D-17A0A075B6S4 117 aa18.02■□□□□ 0.48
CLN3-207ENST00000395653 A0A1B0GW55 424 aa18.02■□□□□ 0.48
CLN3-207ENST00000395653 C22orf46C9J442 243 aa18.02■□□□□ 0.48
CLN3-207ENST00000395653 SIGLEC5O15389 551 aa18.02■□□□□ 0.48
CLN3-207ENST00000395653 NDUFB3O43676 98 aa18.02■□□□□ 0.48
CLN3-207ENST00000395653 ENSAO43768 121 aaKnown RBP18.02■□□□□ 0.48
CLN3-207ENST00000395653 ECDO95905 644 aaPredicted RBP18.02■□□□□ 0.48
CLN3-207ENST00000395653 CD1AP06126 327 aa18.02■□□□□ 0.48
CLN3-207ENST00000395653 DUX4L2P0CJ85 424 aa18.02■□□□□ 0.48
CLN3-207ENST00000395653 DUX4L3P0CJ86 424 aa18.02■□□□□ 0.48
CLN3-207ENST00000395653 DUX4L4P0CJ87 422 aa18.02■□□□□ 0.48
CLN3-207ENST00000395653 DUX4L5P0CJ88 424 aa18.02■□□□□ 0.48
CLN3-207ENST00000395653 DUX4L6P0CJ89 424 aa18.02■□□□□ 0.48
CLN3-207ENST00000395653 DUX4L7P0CJ90 424 aa18.02■□□□□ 0.48
CLN3-207ENST00000395653 ACSM1Q08AH1 577 aa18.02■□□□□ 0.48
CLN3-207ENST00000395653 KRTAP21-3Q3LHN1 58 aa18.02■□□□□ 0.48
CLN3-207ENST00000395653 DUX4L9Q6RFH8 374 aaPredicted RBP18.02■□□□□ 0.48
CLN3-207ENST00000395653 SLC25A26Q70HW3 274 aa18.02■□□□□ 0.48
CLN3-207ENST00000395653 C1QL2Q7Z5L3 287 aa18.02■□□□□ 0.48
CLN3-207ENST00000395653 PRIMA1Q86XR5 153 aa18.02■□□□□ 0.48
CLN3-207ENST00000395653 SGCDQ92629 289 aa18.02■□□□□ 0.48
CLN3-207ENST00000395653 TMEM106AQ96A25 262 aa18.02■□□□□ 0.48
CLN3-207ENST00000395653 CEP19Q96LK0 163 aa18.02■□□□□ 0.48
CLN3-207ENST00000395653 NUDT16L1Q9BRJ7 211 aaKnown RBP18.02■□□□□ 0.48
CLN3-207ENST00000395653 MTCH1Q9NZJ7 389 aa18.02■□□□□ 0.48
CLN3-207ENST00000395653 DUX4Q9UBX2 424 aa18.02■□□□□ 0.48
CLN3-207ENST00000395653 AUP1Q9Y679 476 aa18.02■□□□□ 0.48
CLN3-207ENST00000395653 TRBV5-5A0A0J9YX44 114 aa18.01■□□□□ 0.47
CLN3-207ENST00000395653 RGS10O43665 173 aa18.01■□□□□ 0.47
CLN3-207ENST00000395653 CYB5AP00167 134 aa18.01■□□□□ 0.47
CLN3-207ENST00000395653 PLATP00750 562 aa18.01■□□□□ 0.47
CLN3-207ENST00000395653 IFNA2P01563 188 aa18.01■□□□□ 0.47
CLN3-207ENST00000395653 DOC2BQ14184 412 aa18.01■□□□□ 0.47
CLN3-207ENST00000395653 IRF3Q14653 427 aa18.01■□□□□ 0.47
CLN3-207ENST00000395653 LRRC10Q5BKY1 277 aa18.01■□□□□ 0.47
CLN3-207ENST00000395653 ZNF529Q6P280 563 aa18.01■□□□□ 0.47
CLN3-207ENST00000395653 MKXQ8IYA7 352 aa18.01■□□□□ 0.47
CLN3-207ENST00000395653 ST8SIA4Q92187 359 aa18.01■□□□□ 0.47
CLN3-207ENST00000395653 SDSLQ96GA7 329 aa18.01■□□□□ 0.47
CLN3-207ENST00000395653 Q9H521 79 aa18.01■□□□□ 0.47
CLN3-207ENST00000395653 LSM2Q9Y333 95 aaKnown RBP18.01■□□□□ 0.47
CLN3-207ENST00000395653 DOCK11Q5JSL3 2073 aa18.01■□□□□ 0.47
CLN3-207ENST00000395653 LIPFP07098 398 aa18■□□□□ 0.47
CLN3-207ENST00000395653 PPIAL4GP0DN37 164 aa18■□□□□ 0.47
CLN3-207ENST00000395653 CELP19835 753 aa18■□□□□ 0.47
CLN3-207ENST00000395653 RAB3AP20336 220 aa18■□□□□ 0.47
CLN3-207ENST00000395653 GABRA2P47869 451 aa18■□□□□ 0.47
CLN3-207ENST00000395653 POU3F4P49335 361 aa18■□□□□ 0.47
CLN3-207ENST00000395653 RPS11P62280 158 aaKnown RBP eCLIP18■□□□□ 0.47
CLN3-207ENST00000395653 IKZF1Q13422 519 aa18■□□□□ 0.47
CLN3-207ENST00000395653 DGUOKQ16854 277 aa18■□□□□ 0.47
CLN3-207ENST00000395653 Q499Y3 187 aa18■□□□□ 0.47
CLN3-207ENST00000395653 RBM48Q5RL73 367 aaKnown RBP18■□□□□ 0.47
CLN3-207ENST00000395653 ASPHD2Q6ICH7 369 aa18■□□□□ 0.47
CLN3-207ENST00000395653 BTN2A1Q7KYR7 527 aa18■□□□□ 0.47
CLN3-207ENST00000395653 Q8IYB0 196 aa18■□□□□ 0.47
CLN3-207ENST00000395653 OR13C5Q8NGS8 318 aa18■□□□□ 0.47
CLN3-207ENST00000395653 SLAMF9Q96A28 289 aa18■□□□□ 0.47
CLN3-207ENST00000395653 BLOC1S6Q9UL45 172 aa18■□□□□ 0.47
CLN3-207ENST00000395653 RFPL4AA6NLU0 287 aa17.99■□□□□ 0.47
CLN3-207ENST00000395653 RFPL4AL1F8VTS6 287 aa17.99■□□□□ 0.47
CLN3-207ENST00000395653 KNG1P01042 644 aa17.99■□□□□ 0.47
CLN3-207ENST00000395653 TFF1P04155 84 aa17.99■□□□□ 0.47
CLN3-207ENST00000395653 HCKP08631 526 aa17.99■□□□□ 0.47
CLN3-207ENST00000395653 ADRA2CP18825 462 aa17.99■□□□□ 0.47
CLN3-207ENST00000395653 PDZK1IP1Q13113 114 aa17.99■□□□□ 0.47
CLN3-207ENST00000395653 SPHARQ15513 63 aa17.99■□□□□ 0.47
CLN3-207ENST00000395653 PRSS48Q7RTY5 328 aa17.99■□□□□ 0.47
CLN3-207ENST00000395653 PNLDC1Q8NA58 520 aaKnown RBP17.99■□□□□ 0.47
CLN3-207ENST00000395653 NANPQ8TBE9 248 aa17.99■□□□□ 0.47
CLN3-207ENST00000395653 CPNE2Q96FN4 548 aaPredicted RBP17.99■□□□□ 0.47
CLN3-207ENST00000395653 TAS2R4Q9NYW5 299 aa17.99■□□□□ 0.47
CLN3-207ENST00000395653 MAB21L2Q9Y586 359 aa17.99■□□□□ 0.47
CLN3-207ENST00000395653 CUBNO60494 3623 aa17.99■□□□□ 0.47
CLN3-207ENST00000395653 PNMA8CA0A1B0GUJ8 204 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms