RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 ZNF649Q9BS31 505 aa8.98□□□□□ -0.97
COL6A3-205ENST00000392004 TMPRSS13Q9BYE2 586 aa8.98□□□□□ -0.97
COL6A3-205ENST00000392004 IFT22Q9H7X7 185 aa8.98□□□□□ -0.97
COL6A3-205ENST00000392004 GOSR2O14653 212 aa8.98□□□□□ -0.97
COL6A3-205ENST00000392004 FGF2P09038 288 aa8.98□□□□□ -0.97
COL6A3-205ENST00000392004 ALOX5APP20292 161 aa8.98□□□□□ -0.97
COL6A3-205ENST00000392004 CHRNB4P30926 498 aa8.98□□□□□ -0.97
COL6A3-205ENST00000392004 ART1P52961 327 aa8.98□□□□□ -0.97
COL6A3-205ENST00000392004 MRPS10P82664 201 aaKnown RBP8.98□□□□□ -0.97
COL6A3-205ENST00000392004 ABCA11PQ4W5N1 156 aa8.98□□□□□ -0.97
COL6A3-205ENST00000392004 SHEQ5VZ18 495 aa8.98□□□□□ -0.97
COL6A3-205ENST00000392004 FADS6Q8N9I5 356 aa8.98□□□□□ -0.97
COL6A3-205ENST00000392004 RFESDQ8TAC1 157 aa8.98□□□□□ -0.97
COL6A3-205ENST00000392004 ZNRF4Q8WWF5 429 aa8.98□□□□□ -0.97
COL6A3-205ENST00000392004 ADAT1Q9BUB4 502 aaKnown RBP8.98□□□□□ -0.97
COL6A3-205ENST00000392004 OR2H1Q9GZK4 316 aa8.98□□□□□ -0.97
COL6A3-205ENST00000392004 TINAGL1Q9GZM7 467 aaPredicted RBP8.98□□□□□ -0.97
COL6A3-205ENST00000392004 CHST6Q9GZX3 395 aa8.98□□□□□ -0.97
COL6A3-205ENST00000392004 CA10Q9NS85 328 aa8.98□□□□□ -0.97
COL6A3-205ENST00000392004 TRAPPC2LQ9UL33 140 aa8.98□□□□□ -0.97
COL6A3-205ENST00000392004 AQP7O14520 342 aa8.98□□□□□ -0.97
COL6A3-205ENST00000392004 CDIPTO14735 213 aa8.98□□□□□ -0.97
COL6A3-205ENST00000392004 IL5P05113 134 aa8.98□□□□□ -0.97
COL6A3-205ENST00000392004 UBCP0CG48 685 aaKnown RBP8.98□□□□□ -0.97
COL6A3-205ENST00000392004 PTGER4P35408 488 aa8.98□□□□□ -0.97
COL6A3-205ENST00000392004 CBX5P45973 191 aa8.98□□□□□ -0.97
COL6A3-205ENST00000392004 CHRFAM7AQ494W8 412 aa8.98□□□□□ -0.97
COL6A3-205ENST00000392004 ELP2Q6IA86 826 aa8.98□□□□□ -0.97
COL6A3-205ENST00000392004 STPG2Q8N412 459 aa8.98□□□□□ -0.97
COL6A3-205ENST00000392004 NPDC1Q9NQX5 325 aaPredicted RBP8.98□□□□□ -0.97
COL6A3-205ENST00000392004 GLRX2Q9NS18 164 aa8.98□□□□□ -0.97
COL6A3-205ENST00000392004 GNG12Q9UBI6 72 aa8.98□□□□□ -0.97
COL6A3-205ENST00000392004 WNK1Q9H4A3 2382 aa8.98□□□□□ -0.97
COL6A3-205ENST00000392004 FRYQ5TBA9 3013 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 LRRC30A6NM36 301 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 SC5DO75845 299 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 RBP2P50120 134 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 MFGE8Q08431 387 aaPredicted RBP8.97□□□□□ -0.97
COL6A3-205ENST00000392004 EXOSC6Q5RKV6 272 aaKnown RBP8.97□□□□□ -0.97
COL6A3-205ENST00000392004 OR6K3Q8NGY3 331 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 TMEM59Q9BXS4 323 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 R4GMQ9 66 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 MEGF11A6BM72 1044 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 DISC1C4P0D8 188 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 NDUFA2O43678 99 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 SULT1B1O43704 296 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 CYTIPO60759 359 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 GNB2P62879 340 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 TNFAIP6P98066 277 aaPredicted RBP8.97□□□□□ -0.97
COL6A3-205ENST00000392004 DHODHQ02127 395 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 GGTLC2Q14390 218 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 LINC00303Q3SY05 128 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 PHYHD1Q5SRE7 291 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 NHLRC1Q6VVB1 395 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 ZNF565Q8N9K5 539 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 DERL3Q96Q80 235 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 TSNAXQ99598 290 aaKnown RBP8.97□□□□□ -0.97
COL6A3-205ENST00000392004 KLK11Q9UBX7 282 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 MRM2Q9UI43 246 aaKnown RBP8.97□□□□□ -0.97
COL6A3-205ENST00000392004 TEX13DA0A0J9YY54 714 aaPredicted RBP8.97□□□□□ -0.97
COL6A3-205ENST00000392004 OR14I1A6ND48 311 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 HMSDA8MTL9 139 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 RBBP9O75884 186 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 KNG1P01042 644 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 PGA4P0DJD7 388 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 PGA3P0DJD8 388 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 SRMP19623 302 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 CTAG1AP78358 180 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 PAN3Q58A45 887 aaKnown RBP8.97□□□□□ -0.97
COL6A3-205ENST00000392004 AVPI1Q5T686 147 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 PRAMEF6Q5VXH4 476 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 ZNF626Q68DY1 528 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 DMKNQ6E0U4 476 aaPredicted RBP8.97□□□□□ -0.97
COL6A3-205ENST00000392004 DOK3Q7L591 496 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 CCDC54Q8NEL0 328 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 OR8B12Q8NGG6 310 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 LILRB1Q8NHL6 650 aaPredicted RBP8.97□□□□□ -0.97
COL6A3-205ENST00000392004 SLAMF9Q96A28 289 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 TIMD4Q96H15 378 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 NKX6-2Q9C056 277 aaPredicted RBP8.97□□□□□ -0.97
COL6A3-205ENST00000392004 KCNK15Q9H427 330 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 SCPEP1Q9HB40 452 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 COMMD9Q9P000 198 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 PIPOXQ9P0Z9 390 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 MBD2Q9UBB5 411 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 MALRD1Q5VYJ5 2156 aa8.97□□□□□ -0.97
COL6A3-205ENST00000392004 TRAV39A0A0B4J263 110 aa8.96□□□□□ -0.97
COL6A3-205ENST00000392004 KANTRA0A1W2PQU2 76 aa8.96□□□□□ -0.97
COL6A3-205ENST00000392004 ZNF98A6NK75 572 aa8.96□□□□□ -0.97
COL6A3-205ENST00000392004 PTHLHP12272 177 aa8.96□□□□□ -0.97
COL6A3-205ENST00000392004 HTR2CP28335 458 aa8.96□□□□□ -0.97
COL6A3-205ENST00000392004 IL2RGP31785 369 aa8.96□□□□□ -0.97
COL6A3-205ENST00000392004 HERV-K104P61576 105 aa8.96□□□□□ -0.97
COL6A3-205ENST00000392004 PCK2Q16822 640 aa8.96□□□□□ -0.97
COL6A3-205ENST00000392004 FAAP20Q6NZ36 180 aa8.96□□□□□ -0.97
COL6A3-205ENST00000392004 ZNF584Q8IVC4 421 aa8.96□□□□□ -0.97
COL6A3-205ENST00000392004 ARL6IP6Q8N6S5 226 aa8.96□□□□□ -0.97
COL6A3-205ENST00000392004 CSNK2A3Q8NEV1 391 aa8.96□□□□□ -0.97
COL6A3-205ENST00000392004 PERPQ96FX8 193 aa8.96□□□□□ -0.97
COL6A3-205ENST00000392004 ZNF488Q96MN9 340 aa8.96□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms