RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 TAS2R60P59551 318 aa13.92□□□□□ -0.18
CKAP4-201ENST00000378026 AKR1C8PQ5T2L2 129 aa13.92□□□□□ -0.18
CKAP4-201ENST00000378026 OR10AD1Q8NGE0 317 aa13.92□□□□□ -0.18
CKAP4-201ENST00000378026 DYRK2Q92630 601 aa13.92□□□□□ -0.18
CKAP4-201ENST00000378026 ZNF581Q9P0T4 197 aa13.92□□□□□ -0.18
CKAP4-201ENST00000378026 SUSD2Q9UGT4 822 aa13.92□□□□□ -0.18
CKAP4-201ENST00000378026 TMEM150CB9EJG8 249 aa13.91□□□□□ -0.18
CKAP4-201ENST00000378026 E9PLN8 166 aa13.91□□□□□ -0.18
CKAP4-201ENST00000378026 TERTO14746 1132 aaKnown RBP13.91□□□□□ -0.18
CKAP4-201ENST00000378026 HSD17B6O14756 317 aa13.91□□□□□ -0.18
CKAP4-201ENST00000378026 NXPH3O95157 252 aa13.91□□□□□ -0.18
CKAP4-201ENST00000378026 KLF8O95600 359 aaPredicted RBP13.91□□□□□ -0.18
CKAP4-201ENST00000378026 ONECUT2O95948 504 aa13.91□□□□□ -0.18
CKAP4-201ENST00000378026 TNFP01375 233 aa13.91□□□□□ -0.18
CKAP4-201ENST00000378026 CTSEP14091 401 aa13.91□□□□□ -0.18
CKAP4-201ENST00000378026 PKIAP61925 76 aa13.91□□□□□ -0.18
CKAP4-201ENST00000378026 HSD11B2P80365 405 aa13.91□□□□□ -0.18
CKAP4-201ENST00000378026 H1FNTQ75WM6 255 aaPredicted RBP13.91□□□□□ -0.18
CKAP4-201ENST00000378026 C20orf196Q8IYI0 205 aa13.91□□□□□ -0.18
CKAP4-201ENST00000378026 RTN4IP1Q8WWV3 396 aaPredicted RBP13.91□□□□□ -0.18
CKAP4-201ENST00000378026 SNX22Q96L94 193 aa13.91□□□□□ -0.18
CKAP4-201ENST00000378026 TWSG1Q9GZX9 223 aa13.91□□□□□ -0.18
CKAP4-201ENST00000378026 CERS4Q9HA82 394 aa13.91□□□□□ -0.18
CKAP4-201ENST00000378026 SDHAF3Q9NRP4 125 aa13.91□□□□□ -0.18
CKAP4-201ENST00000378026 AK3Q9UIJ7 227 aa13.91□□□□□ -0.18
CKAP4-201ENST00000378026 LHFPL6Q9Y693 200 aa13.91□□□□□ -0.18
CKAP4-201ENST00000378026 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.91□□□□□ -0.18
CKAP4-201ENST00000378026 ZNF724A8MTY0 619 aa13.91□□□□□ -0.18
CKAP4-201ENST00000378026 FTCDNL1E5RQL4 147 aa13.91□□□□□ -0.18
CKAP4-201ENST00000378026 K7N7A8 449 aa13.91□□□□□ -0.18
CKAP4-201ENST00000378026 TNFSF12O43508 249 aa13.91□□□□□ -0.18
CKAP4-201ENST00000378026 IGHMP01871 453 aa13.91□□□□□ -0.18
CKAP4-201ENST00000378026 FCGR2AP12318 317 aa13.91□□□□□ -0.18
CKAP4-201ENST00000378026 OR11L1Q8NGX0 322 aa13.91□□□□□ -0.18
CKAP4-201ENST00000378026 ABHD5Q8WTS1 349 aa13.91□□□□□ -0.18
CKAP4-201ENST00000378026 PACRGQ96M98 296 aaPredicted RBP13.91□□□□□ -0.18
CKAP4-201ENST00000378026 PISDQ9UG56 409 aa13.91□□□□□ -0.18
CKAP4-201ENST00000378026 CTSDP07339 412 aaPredicted RBP13.9□□□□□ -0.18
CKAP4-201ENST00000378026 CCL5P13501 91 aa13.9□□□□□ -0.18
CKAP4-201ENST00000378026 ATP6V0CP27449 155 aa13.9□□□□□ -0.18
CKAP4-201ENST00000378026 CASP6P55212 293 aa13.9□□□□□ -0.18
CKAP4-201ENST00000378026 NOGQ13253 232 aa13.9□□□□□ -0.18
CKAP4-201ENST00000378026 HIKESHIQ53FT3 197 aa13.9□□□□□ -0.18
CKAP4-201ENST00000378026 SHISA6Q6ZSJ9 500 aa13.9□□□□□ -0.18
CKAP4-201ENST00000378026 TGIF2LXQ8IUE1 241 aa13.9□□□□□ -0.18
CKAP4-201ENST00000378026 ZNF721Q8TF20 911 aa13.9□□□□□ -0.18
CKAP4-201ENST00000378026 ZNF296Q8WUU4 475 aaPredicted RBP13.9□□□□□ -0.18
CKAP4-201ENST00000378026 FAAP24Q9BTP7 215 aa13.9□□□□□ -0.18
CKAP4-201ENST00000378026 A0A1W2PQF6 199 aa13.9□□□□□ -0.18
CKAP4-201ENST00000378026 ARGFXA6NJG6 315 aa13.9□□□□□ -0.18
CKAP4-201ENST00000378026 FBXW4P57775 412 aa13.9□□□□□ -0.18
CKAP4-201ENST00000378026 ZNF385CQ66K41 422 aaPredicted RBP13.9□□□□□ -0.18
CKAP4-201ENST00000378026 SLC22A18ASQ8N1D0 253 aa13.9□□□□□ -0.18
CKAP4-201ENST00000378026 TMEM217Q8N7C4 229 aa13.9□□□□□ -0.18
CKAP4-201ENST00000378026 CUTCQ9NTM9 273 aa13.9□□□□□ -0.18
CKAP4-201ENST00000378026 CYP8B1Q9UNU6 501 aa13.9□□□□□ -0.18
CKAP4-201ENST00000378026 SLC7A11Q9UPY5 501 aa13.9□□□□□ -0.18
CKAP4-201ENST00000378026 TLCD2A6NGC4 264 aa13.89□□□□□ -0.19
CKAP4-201ENST00000378026 DDAH2O95865 285 aa13.89□□□□□ -0.19
CKAP4-201ENST00000378026 SRP19P09132 144 aaKnown RBP13.89□□□□□ -0.19
CKAP4-201ENST00000378026 MNX1P50219 401 aaPredicted RBP13.89□□□□□ -0.19
CKAP4-201ENST00000378026 PRSS12P56730 875 aa13.89□□□□□ -0.19
CKAP4-201ENST00000378026 RTL10Q7L3V2 364 aa13.89□□□□□ -0.19
CKAP4-201ENST00000378026 LFNGQ8NES3 379 aa13.89□□□□□ -0.19
CKAP4-201ENST00000378026 CPNE4Q96A23 557 aaPredicted RBP13.89□□□□□ -0.19
CKAP4-201ENST00000378026 NIPSNAP3BQ9BS92 247 aa13.89□□□□□ -0.19
CKAP4-201ENST00000378026 MAGT1Q9H0U3 335 aa13.89□□□□□ -0.19
CKAP4-201ENST00000378026 SHANK1Q9Y566 2161 aa13.89□□□□□ -0.19
CKAP4-201ENST00000378026 KIAA0100Q14667 2235 aaKnown RBP13.89□□□□□ -0.19
CKAP4-201ENST00000378026 GEMIN2O14893 280 aaKnown RBP13.89□□□□□ -0.19
CKAP4-201ENST00000378026 ST8SIA3O43173 380 aa13.89□□□□□ -0.19
CKAP4-201ENST00000378026 PGA4P0DJD7 388 aa13.89□□□□□ -0.19
CKAP4-201ENST00000378026 PGA5P0DJD9 388 aa13.89□□□□□ -0.19
CKAP4-201ENST00000378026 ZNF728P0DKX0 622 aa13.89□□□□□ -0.19
CKAP4-201ENST00000378026 FAHP16930 419 aa13.89□□□□□ -0.19
CKAP4-201ENST00000378026 SUCLG1P53597 346 aaKnown RBP13.89□□□□□ -0.19
CKAP4-201ENST00000378026 CLRN1P58418 232 aa13.89□□□□□ -0.19
CKAP4-201ENST00000378026 RUNX1Q01196 453 aa13.89□□□□□ -0.19
CKAP4-201ENST00000378026 WSB1Q9Y6I7 421 aa13.89□□□□□ -0.19
CKAP4-201ENST00000378026 SDK1Q7Z5N4 2213 aa13.89□□□□□ -0.19
CKAP4-201ENST00000378026 A0A087WZY1 265 aa13.89□□□□□ -0.19
CKAP4-201ENST00000378026 ADAM10O14672 748 aa13.89□□□□□ -0.19
CKAP4-201ENST00000378026 TSPAN2O60636 221 aa13.89□□□□□ -0.19
CKAP4-201ENST00000378026 DBHP09172 617 aa13.89□□□□□ -0.19
CKAP4-201ENST00000378026 EWSR1Q01844 656 aaKnown RBP eCLIP13.89□□□□□ -0.19
CKAP4-201ENST00000378026 NSDHLQ15738 373 aa13.89□□□□□ -0.19
CKAP4-201ENST00000378026 SPSB3Q6PJ21 355 aa13.89□□□□□ -0.19
CKAP4-201ENST00000378026 WDFY3Q8IZQ1 3526 aa13.89□□□□□ -0.19
CKAP4-201ENST00000378026 SMCO3A2RU48 225 aa13.88□□□□□ -0.19
CKAP4-201ENST00000378026 F5H5K5 113 aa13.88□□□□□ -0.19
CKAP4-201ENST00000378026 PHF1O43189 567 aaPredicted RBP13.88□□□□□ -0.19
CKAP4-201ENST00000378026 ANGPTL7O43827 346 aa13.88□□□□□ -0.19
CKAP4-201ENST00000378026 IL2RGP31785 369 aa13.88□□□□□ -0.19
CKAP4-201ENST00000378026 EFNA3P52797 238 aa13.88□□□□□ -0.19
CKAP4-201ENST00000378026 GFERP55789 205 aa13.88□□□□□ -0.19
CKAP4-201ENST00000378026 GABREP78334 506 aa13.88□□□□□ -0.19
CKAP4-201ENST00000378026 TMEM187Q14656 261 aa13.88□□□□□ -0.19
CKAP4-201ENST00000378026 TAF9Q16594 264 aa13.88□□□□□ -0.19
CKAP4-201ENST00000378026 TMEM123Q8N131 208 aa13.88□□□□□ -0.19
CKAP4-201ENST00000378026 TVP23CQ96ET8 276 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms