RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 BORCS7-ASMTA0A0B4J1R7 106 aa14.3□□□□□ -0.12
SDC4-201ENST00000372733 C2CD4DB7Z1M9 353 aa14.3□□□□□ -0.12
SDC4-201ENST00000372733 OR2J2O76002 312 aa14.3□□□□□ -0.12
SDC4-201ENST00000372733 SEC11BP0C7V7 166 aa14.3□□□□□ -0.12
SDC4-201ENST00000372733 PPP1CCP36873 323 aaKnown RBP14.3□□□□□ -0.12
SDC4-201ENST00000372733 SULT1A1P50225 295 aa14.3□□□□□ -0.12
SDC4-201ENST00000372733 TMEM187Q14656 261 aa14.3□□□□□ -0.12
SDC4-201ENST00000372733 TAF9Q16594 264 aa14.3□□□□□ -0.12
SDC4-201ENST00000372733 ADAM5Q6NVV9 412 aa14.3□□□□□ -0.12
SDC4-201ENST00000372733 C20orf196Q8IYI0 205 aa14.3□□□□□ -0.12
SDC4-201ENST00000372733 OR2M3Q8NG83 312 aa14.3□□□□□ -0.12
SDC4-201ENST00000372733 HPSE2Q8WWQ2 592 aa14.3□□□□□ -0.12
SDC4-201ENST00000372733 MARS2Q96GW9 593 aaKnown RBP14.3□□□□□ -0.12
SDC4-201ENST00000372733 PIGQQ9BRB3 760 aa14.3□□□□□ -0.12
SDC4-201ENST00000372733 NAA60Q9H7X0 242 aa14.3□□□□□ -0.12
SDC4-201ENST00000372733 AK3Q9UIJ7 227 aa14.3□□□□□ -0.12
SDC4-201ENST00000372733 ZNF850A8MQ14 1090 aa14.29□□□□□ -0.12
SDC4-201ENST00000372733 CA11O75493 328 aa14.29□□□□□ -0.12
SDC4-201ENST00000372733 ZNF728P0DKX0 622 aa14.29□□□□□ -0.12
SDC4-201ENST00000372733 OR13C7P0DN81 318 aa14.29□□□□□ -0.12
SDC4-201ENST00000372733 MSR1P21757 451 aa14.29□□□□□ -0.12
SDC4-201ENST00000372733 MSX1P28360 303 aa14.29□□□□□ -0.12
SDC4-201ENST00000372733 P2RY1P47900 373 aa14.29□□□□□ -0.12
SDC4-201ENST00000372733 ASCL1P50553 236 aa14.29□□□□□ -0.12
SDC4-201ENST00000372733 UCP2P55851 309 aa14.29□□□□□ -0.12
SDC4-201ENST00000372733 SLC35A1P78382 337 aa14.29□□□□□ -0.12
SDC4-201ENST00000372733 ENDOGQ14249 297 aaKnown RBP14.29□□□□□ -0.12
SDC4-201ENST00000372733 PLXDC2Q6UX71 529 aa14.29□□□□□ -0.12
SDC4-201ENST00000372733 COMMD1Q8N668 190 aa14.29□□□□□ -0.12
SDC4-201ENST00000372733 OR52M1Q8NGK5 317 aa14.29□□□□□ -0.12
SDC4-201ENST00000372733 OR5L1Q8NGL2 311 aa14.29□□□□□ -0.12
SDC4-201ENST00000372733 PP6455Q8WZ26 134 aa14.29□□□□□ -0.12
SDC4-201ENST00000372733 WDR77Q9BQA1 342 aaPredicted RBP14.29□□□□□ -0.12
SDC4-201ENST00000372733 GINS3Q9BRX5 216 aa14.29□□□□□ -0.12
SDC4-201ENST00000372733 DECR2Q9NUI1 292 aa14.29□□□□□ -0.12
SDC4-201ENST00000372733 CNTRLQ7Z7A1 2325 aa14.29□□□□□ -0.12
SDC4-201ENST00000372733 FAM221AA4D161 298 aa14.29□□□□□ -0.12
SDC4-201ENST00000372733 AQP7P3A6NL99 342 aa14.29□□□□□ -0.12
SDC4-201ENST00000372733 SPRY1O43609 319 aaPredicted RBP14.29□□□□□ -0.12
SDC4-201ENST00000372733 CLN5O75503 358 aa14.29□□□□□ -0.12
SDC4-201ENST00000372733 TIAF1O95411 115 aa14.29□□□□□ -0.12
SDC4-201ENST00000372733 IGHV2-5P01817 119 aa14.29□□□□□ -0.12
SDC4-201ENST00000372733 ZNF133P52736 654 aaPredicted RBP14.29□□□□□ -0.12
SDC4-201ENST00000372733 ARL6IP1Q15041 203 aa14.29□□□□□ -0.12
SDC4-201ENST00000372733 RSPO1Q2MKA7 263 aaPredicted RBP14.29□□□□□ -0.12
SDC4-201ENST00000372733 ABCA11PQ4W5N1 156 aa14.29□□□□□ -0.12
SDC4-201ENST00000372733 NAXEQ8NCW5 288 aa14.29□□□□□ -0.12
SDC4-201ENST00000372733 RTN4IP1Q8WWV3 396 aaPredicted RBP14.29□□□□□ -0.12
SDC4-201ENST00000372733 GNRHR2Q96P88 292 aa14.29□□□□□ -0.12
SDC4-201ENST00000372733 MIOXQ9UGB7 285 aa14.29□□□□□ -0.12
SDC4-201ENST00000372733 A0A0U1RQV5 110 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 GPR137BO60478 399 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 CTSSP25774 331 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 LTBRP36941 435 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 NHLH2Q02577 135 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 EIF3IQ13347 325 aaKnown RBP14.28□□□□□ -0.12
SDC4-201ENST00000372733 PPA1Q15181 289 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 SNAI3Q3KNW1 292 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 IGSF11Q5DX21 431 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 PRAMEF20Q5VT98 475 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 BRICD5Q6PL45 260 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 TGIF2Q9GZN2 237 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 TUBA4BQ9H853 241 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 PIAS2O75928 621 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 CSNK1A1P48729 337 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 RTL6Q6ICC9 239 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 TMEM182Q6ZP80 229 aaPredicted RBP14.28□□□□□ -0.12
SDC4-201ENST00000372733 FAM213BQ8TBF2 198 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 KCNIP3Q9Y2W7 256 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 RFNGQ9Y644 331 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 IGLV3-32A0A0A0MS00 114 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 IGHV3-15A0A0B4J1V0 119 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 EIF1BO60739 113 aaKnown RBP14.28□□□□□ -0.12
SDC4-201ENST00000372733 EIF1P41567 113 aaKnown RBP14.28□□□□□ -0.12
SDC4-201ENST00000372733 MTCP1P56278 107 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 NXPH1P58417 271 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 ZNF239Q16600 458 aaKnown RBP14.28□□□□□ -0.12
SDC4-201ENST00000372733 NKAIN1Q4KMZ8 207 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 RHBDD2Q6NTF9 364 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 SYT13Q7L8C5 426 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 KDF1Q8NAX2 398 aaPredicted RBP14.28□□□□□ -0.12
SDC4-201ENST00000372733 GJC3Q8NFK1 279 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 OR11L1Q8NGX0 322 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 OR2AE1Q8NHA4 323 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 SLC22A8Q8TCC7 542 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 SLC39A7Q92504 469 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 KCNJ16Q9NPI9 418 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 NECAP2Q9NVZ3 263 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 RCL1Q9Y2P8 373 aaKnown RBP14.28□□□□□ -0.12
SDC4-201ENST00000372733 B3GALT1Q9Y5Z6 326 aa14.28□□□□□ -0.12
SDC4-201ENST00000372733 M0R135 149 aa14.27□□□□□ -0.13
SDC4-201ENST00000372733 LSM6P62312 80 aaKnown RBP14.27□□□□□ -0.13
SDC4-201ENST00000372733 POLR2GP62487 172 aaKnown RBP eCLIP14.27□□□□□ -0.13
SDC4-201ENST00000372733 TSC22D1Q15714 1073 aa14.27□□□□□ -0.13
SDC4-201ENST00000372733 CARFQ8N187 725 aa14.27□□□□□ -0.13
SDC4-201ENST00000372733 ZNF799Q96GE5 643 aa14.27□□□□□ -0.13
SDC4-201ENST00000372733 NELFAQ9H3P2 528 aa14.27□□□□□ -0.13
SDC4-201ENST00000372733 SLC2A9Q9NRM0 540 aa14.27□□□□□ -0.13
SDC4-201ENST00000372733 MYOTQ9UBF9 498 aa14.27□□□□□ -0.13
SDC4-201ENST00000372733 WDR87Q6ZQQ6 2873 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms