RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 C18orf12Q96KH6 178 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 GPER1Q99527 375 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 NIPSNAP3BQ9BS92 247 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 URM1Q9BTM9 101 aaKnown RBP5.94□□□□□ -1.46
VPS39-202ENST00000348544 DDA1Q9BW61 102 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 VN1R1Q9GZP7 353 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 C11orf1Q9H5F2 150 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 UNKLQ9H9P5 680 aaKnown RBP5.94□□□□□ -1.46
VPS39-202ENST00000348544 AK3Q9UIJ7 227 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 WSB1Q9Y6I7 421 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 IGSF23A1L1A6 192 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 E9PLN8 166 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 DVL1O14640 695 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 RRP8O43159 456 aaKnown RBP5.94□□□□□ -1.46
VPS39-202ENST00000348544 HSPB1P04792 205 aaKnown RBP5.94□□□□□ -1.46
VPS39-202ENST00000348544 GJA4P35212 333 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 RND2P52198 227 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 RNF4P78317 190 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 IL13RA2Q14627 380 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 NFATC4Q14934 902 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 ABLIM2Q6H8Q1 611 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 SLC22A25Q6T423 547 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 C6orf201Q7Z4U5 140 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 SLC35E3Q7Z769 313 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 COMMD2Q86X83 199 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 DTX1Q86Y01 620 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 FBXL14Q8N1E6 418 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 C12orf76Q8N812 135 aaPredicted RBP5.94□□□□□ -1.46
VPS39-202ENST00000348544 NAXEQ8NCW5 288 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 BEND2Q8NDZ0 799 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 NPRL2Q8WTW4 380 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 TOMM40LQ969M1 308 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 RAB24Q969Q5 203 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 ADIPOR1Q96A54 375 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 NOL4LQ96MY1 436 aaPredicted RBP5.94□□□□□ -1.46
VPS39-202ENST00000348544 ZNF700Q9H0M5 742 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 NAA60Q9H7X0 242 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 CDH20Q9HBT6 801 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 GPR84Q9NQS5 396 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 PPP1R14DQ9NXH3 145 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 OR14J1Q9UGF5 321 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 LHFPL6Q9Y693 200 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 FAM24AA6NFZ4 105 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 CYTIPO60759 359 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 AHSA1O95433 338 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 ACRP10323 421 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 PNLIPP16233 465 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 EPHA1P21709 976 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 NOVA1P51513 510 aaKnown RBP5.93□□□□□ -1.46
VPS39-202ENST00000348544 POLR2HP52434 150 aaKnown RBP5.93□□□□□ -1.46
VPS39-202ENST00000348544 HLA-DRB3P79483 266 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 ZFP36L1Q07352 338 aaKnown RBP5.93□□□□□ -1.46
VPS39-202ENST00000348544 C21orf62-AS1Q17RA5 79 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 DNM1P34Q6PK57 102 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 FBXW12Q6X9E4 464 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 TMEM183AQ8IXX5 376 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 C1orf87Q8N0U7 546 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 C17orf78Q8N4C9 275 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 OR8G5Q8NG78 346 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 CLDND2Q8NHS1 167 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 RNASEH2CQ8TDP1 164 aaKnown RBP5.93□□□□□ -1.46
VPS39-202ENST00000348544 OIT3Q8WWZ8 545 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 BMFQ96LC9 184 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 GAL3ST4Q96RP7 486 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 EMC6Q9BV81 110 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 SNHG12Q9BXW3 62 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 GPR87Q9BY21 358 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 OR8D2Q9GZM6 311 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 CALHM2Q9HA72 323 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 FAM86C1Q9NVL1 165 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 ZNF581Q9P0T4 197 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 PITPNC1Q9UKF7 332 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 FAM221AA4D161 298 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 A6NIZ1 184 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 NPIPA5E9PKD4 350 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 ST8SIA3O43173 380 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 SEMA4FO95754 770 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 CELA2BP08218 269 aaPredicted RBP5.93□□□□□ -1.46
VPS39-202ENST00000348544 HNRNPA1P09651 372 aaKnown RBP eCLIP5.93□□□□□ -1.46
VPS39-202ENST00000348544 NR2C1P13056 603 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 PGCP20142 388 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 CD200P41217 278 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 PPM1FP49593 454 aaPredicted RBP5.93□□□□□ -1.46
VPS39-202ENST00000348544 ZNF121P58317 390 aaPredicted RBP5.93□□□□□ -1.46
VPS39-202ENST00000348544 RAP1BP61224 184 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 POU3F1Q03052 451 aaPredicted RBP5.93□□□□□ -1.46
VPS39-202ENST00000348544 FAM90A2PQ658T7 463 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 ZNF776Q68DI1 518 aaPredicted RBP5.93□□□□□ -1.46
VPS39-202ENST00000348544 OGFOD3Q6PK18 319 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 LANCL3Q6ZV70 420 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 P4HA3Q7Z4N8 544 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 ODF3L1Q8IXM7 274 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 LRTM2Q8N967 370 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 PLPP5Q8NEB5 264 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 OR4D5Q8NGN0 318 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 OR4X1Q8NH49 305 aa5.93□□□□□ -1.46
VPS39-202ENST00000348544 RTN4IP1Q8WWV3 396 aaPredicted RBP5.93□□□□□ -1.46
VPS39-202ENST00000348544 MSI2Q96DH6 328 aaKnown RBP5.93□□□□□ -1.46
VPS39-202ENST00000348544 LIN37Q96GY3 246 aaPredicted RBP5.93□□□□□ -1.46
VPS39-202ENST00000348544 CDCA3Q99618 268 aaPredicted RBP5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 128.6 ms