RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 LRP3O75074 770 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 FCRL6Q6DN72 434 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 RBMXL3Q8N7X1 1067 aaKnown RBP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 RPUSD4Q96CM3 377 aaKnown RBP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 NIPSNAP1Q9BPW8 284 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 SLC46A2Q9BY10 475 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 NOGQ13253 232 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 SYT14P1Q58G82 188 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 TMEM108Q6UXF1 575 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 Q6ZVL8 140 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 FAM213BQ8TBF2 198 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 ABHD1Q96SE0 405 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 RTP3Q9BQQ7 232 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 POFUT1Q9H488 388 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF281Q9Y2X9 895 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 SLC22A23A1A5C7 686 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 BTG2P78543 158 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 RTL8BQ17RB0 113 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 OR14A16Q8NHC5 309 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 CRYAAP02489 173 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 MPC1LP0DKB6 136 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 GRB2P62993 217 aaKnown RBP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 CSNK1G2P78368 415 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 CDK5R1Q15078 307 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 SPATA46Q5T0L3 261 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 LINC00696Q6ZRV3 163 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 HSPB7Q9UBY9 170 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 VSTM2BA6NLU5 285 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 SURF4O15260 269 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 GSTP1P09211 210 aaKnown RBP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 ABCD3P28288 659 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 PJVKQ0ZLH3 352 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 DEFB110Q30KQ9 67 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 YAE1D1Q9NRH1 226 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF354AO60765 605 aaPredicted RBP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 ETHE1O95571 254 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 HAND1O96004 215 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 RNASE1P07998 156 aaKnown RBP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 RIDAP52758 137 aaKnown RBP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 MORN1Q5T089 497 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 OR13C8Q8NGS7 320 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 RAB1CQ92928 201 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 MARS2Q96GW9 593 aaKnown RBP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 A0A1W2PPE3 182 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 PLA2G10O15496 165 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 FABP2P12104 132 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 LYL1P12980 280 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 TRHRP34981 398 aaPredicted RBP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 PHYKPLQ8IUZ5 450 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 RFESDQ8TAC1 157 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 PTPN13Q12923 2485 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 VENTXO95231 258 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 SLC35G4P0C7Q5 338 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 CCL2P13500 99 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 CTSCP53634 463 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 LDLRAD1Q5T700 205 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 MRPL54Q6P161 138 aaKnown RBP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 SYNPRQ8TBG9 265 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 KIR3DX1Q9H7L2 352 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 GP6Q9HCN6 339 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 FBXL12Q9NXK8 326 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 SF3B6Q9Y3B4 125 aaKnown RBP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 OR2T1O43869 369 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 IL9P15248 144 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 HSD11B2P80365 405 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 TMEM128Q5BJH2 165 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 CIB3Q96Q77 187 aaPredicted RBP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 NDUFAF3Q9BU61 184 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 IGLV3-16A0A075B6K0 115 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 TEX50A0A1B0GTY4 177 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 C5orf49A4QMS7 147 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 SRSF7Q16629 238 aaKnown RBP eCLIP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 OR52E1Q8NGJ3 308 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 LINC00615Q96LM1 132 aaPredicted RBP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 RAMP2O60895 175 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 SRPX2O60687 465 aaPredicted RBP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 TEAD1P28347 426 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 CD34P28906 385 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 CLDN6P56747 220 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 DIO2Q92813 273 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 BCL2L2Q92843 193 aaPredicted RBP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 C6orf106Q9H6K1 298 aaPredicted RBP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 BEX4Q9NWD9 120 aaPredicted RBP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 A0A1B0GUS0 222 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 WNT1P04628 370 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 CHRM4P08173 479 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 OR5G3P0C626 314 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 SLAMF1Q13291 335 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 ARFRP1Q13795 201 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 CNN3Q15417 329 aaKnown RBP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 GCNT2Q8N0V5 402 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 CADM4Q8NFZ8 388 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 OR4D9Q8NGE8 314 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 PPTC7Q8NI37 304 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 TMEM106AQ96A25 262 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 TBX21Q9UL17 535 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 SLC25A6P12236 298 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 OPRD1P41143 372 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 BLKP51451 505 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 DUSP28Q4G0W2 176 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms