RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 KRTAP24-1Q3LI83 254 aa13.11□□□□□ -0.31
CLN3-201ENST00000333496 TMEM244Q5VVB8 128 aa13.11□□□□□ -0.31
CLN3-201ENST00000333496 BTNL3Q6UXE8 466 aa13.11□□□□□ -0.31
CLN3-201ENST00000333496 ZNF788Q6ZQV5 615 aa13.11□□□□□ -0.31
CLN3-201ENST00000333496 CALHM1Q8IU99 346 aa13.11□□□□□ -0.31
CLN3-201ENST00000333496 CCDC54Q8NEL0 328 aa13.11□□□□□ -0.31
CLN3-201ENST00000333496 OR51A4Q8NGJ6 313 aa13.11□□□□□ -0.31
CLN3-201ENST00000333496 OR10AC1Q8NH08 325 aa13.11□□□□□ -0.31
CLN3-201ENST00000333496 ZNF671Q8TAW3 534 aa13.11□□□□□ -0.31
CLN3-201ENST00000333496 TRMT10AQ8TBZ6 339 aaKnown RBP13.11□□□□□ -0.31
CLN3-201ENST00000333496 MYDGFQ969H8 173 aa13.11□□□□□ -0.31
CLN3-201ENST00000333496 ADAT3Q96EY9 351 aaPredicted RBP13.11□□□□□ -0.31
CLN3-201ENST00000333496 CHST5Q9GZS9 411 aa13.11□□□□□ -0.31
CLN3-201ENST00000333496 DNAJB11Q9UBS4 358 aa13.11□□□□□ -0.31
CLN3-201ENST00000333496 IGKV1-27A0A075B6S5 117 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 EFCAB10A6NFE3 127 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 E9PI62 339 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 TCF21O43680 179 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 PPIAL4GP0DN37 164 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 SLC16A12Q6ZSM3 486 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 BTN2A1Q7KYR7 527 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 PRSS48Q7RTY5 328 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 SLC36A1Q7Z2H8 476 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 ZNF573Q86YE8 665 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 EGFL6Q8IUX8 553 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 C22orf15Q8WYQ4 148 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 FCGR1BQ92637 280 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 UPRTQ96BW1 309 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 C10orf35Q96D05 121 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 ZNF488Q96MN9 340 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 GAFA1Q96PS6 74 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 JAM3Q9BX67 310 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 CNOT2Q9NZN8 540 aaKnown RBP13.1□□□□□ -0.31
CLN3-201ENST00000333496 NLKQ9UBE8 527 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 IGKV1D-17A0A075B6S4 117 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 OR2AT4A6NND4 320 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 RNF212BA8MTL3 300 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 J3QT63 122 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 ENSAO43768 121 aaKnown RBP13.1□□□□□ -0.31
CLN3-201ENST00000333496 RGS9O75916 674 aaPredicted RBP13.1□□□□□ -0.31
CLN3-201ENST00000333496 VENTXO95231 258 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 MT-ND2P03891 347 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 CDK1P06493 297 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 PGA5P0DJD9 388 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 PSG2P11465 335 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 PIPP12273 146 aaPredicted RBP13.1□□□□□ -0.31
CLN3-201ENST00000333496 MPZP25189 248 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 SERPINB10P48595 397 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 EMX1Q04741 257 aaPredicted RBP13.1□□□□□ -0.31
CLN3-201ENST00000333496 TUSC1Q2TAM9 212 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 ARMCX4Q5H9R4 360 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 SYT6Q5T7P8 510 aaPredicted RBP13.1□□□□□ -0.31
CLN3-201ENST00000333496 CD276Q5ZPR3 534 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 Q6ZNX1 250 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 ANGPTL5Q86XS5 388 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 PHC2Q8IXK0 858 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 POC1AQ8NBT0 407 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 NPRL2Q8WTW4 380 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 TMEM158Q8WZ71 300 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 ST8SIA4Q92187 359 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 MRPL48Q96GC5 212 aaKnown RBP13.1□□□□□ -0.31
CLN3-201ENST00000333496 DNTTIP1Q9H147 329 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 ZNF222Q9UK12 451 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 NUP50Q9UKX7 468 aa13.1□□□□□ -0.31
CLN3-201ENST00000333496 IGKV1-9A0A0C4DH69 117 aa13.09□□□□□ -0.31
CLN3-201ENST00000333496 FAM230AA0A1W2PPH8 454 aa13.09□□□□□ -0.31
CLN3-201ENST00000333496 NOS1APO75052 506 aaPredicted RBP13.09□□□□□ -0.31
CLN3-201ENST00000333496 INMTO95050 263 aa13.09□□□□□ -0.31
CLN3-201ENST00000333496 IGHV4-38-2P0DP08 117 aa13.09□□□□□ -0.31
CLN3-201ENST00000333496 ETV1P50549 477 aa13.09□□□□□ -0.31
CLN3-201ENST00000333496 FGF12P61328 243 aa13.09□□□□□ -0.31
CLN3-201ENST00000333496 SCGB2A2Q13296 93 aa13.09□□□□□ -0.31
CLN3-201ENST00000333496 IKZF1Q13422 519 aa13.09□□□□□ -0.31
CLN3-201ENST00000333496 C16orf87Q6PH81 154 aa13.09□□□□□ -0.31
CLN3-201ENST00000333496 ACP7Q6ZNF0 438 aa13.09□□□□□ -0.31
CLN3-201ENST00000333496 STX19Q8N4C7 294 aa13.09□□□□□ -0.31
CLN3-201ENST00000333496 FGGYQ96C11 551 aa13.09□□□□□ -0.31
CLN3-201ENST00000333496 SLC6A7Q99884 636 aa13.09□□□□□ -0.31
CLN3-201ENST00000333496 ZNF69Q9UC07 566 aa13.09□□□□□ -0.31
CLN3-201ENST00000333496 HHLA2Q9UM44 414 aa13.09□□□□□ -0.31
CLN3-201ENST00000333496 DSCAML1Q8TD84 2053 aa13.08□□□□□ -0.31
CLN3-201ENST00000333496 GATBO75879 557 aaKnown RBP13.08□□□□□ -0.32
CLN3-201ENST00000333496 ZFPL1O95159 310 aa13.08□□□□□ -0.32
CLN3-201ENST00000333496 ACAA1P09110 424 aaPredicted RBP13.08□□□□□ -0.32
CLN3-201ENST00000333496 MMP9P14780 707 aa13.08□□□□□ -0.32
CLN3-201ENST00000333496 ST3GAL4Q11206 333 aa13.08□□□□□ -0.32
CLN3-201ENST00000333496 ZNF846Q147U1 533 aa13.08□□□□□ -0.32
CLN3-201ENST00000333496 CTF1Q16619 201 aa13.08□□□□□ -0.32
CLN3-201ENST00000333496 DGUOKQ16854 277 aa13.08□□□□□ -0.32
CLN3-201ENST00000333496 BCL6BQ8N143 479 aaPredicted RBP13.08□□□□□ -0.32
CLN3-201ENST00000333496 BATF2Q8N1L9 274 aa13.08□□□□□ -0.32
CLN3-201ENST00000333496 PP6455Q8WZ26 134 aa13.08□□□□□ -0.32
CLN3-201ENST00000333496 YIPF6Q96EC8 236 aa13.08□□□□□ -0.32
CLN3-201ENST00000333496 PDCD1LG2Q9BQ51 273 aa13.08□□□□□ -0.32
CLN3-201ENST00000333496 WDR12Q9GZL7 423 aaKnown RBP13.08□□□□□ -0.32
CLN3-201ENST00000333496 HMG20AQ9NP66 347 aa13.08□□□□□ -0.32
CLN3-201ENST00000333496 RPUSD1Q9UJJ7 312 aaKnown RBP13.08□□□□□ -0.32
CLN3-201ENST00000333496 SLC7A11Q9UPY5 501 aa13.08□□□□□ -0.32
CLN3-201ENST00000333496 MAB21L2Q9Y586 359 aa13.08□□□□□ -0.32
CLN3-201ENST00000333496 IGHV3OR16-10A0A075B7F0 116 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms