RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 OR14J1Q9UGF5 321 aa13.39□□□□□ -0.27
LSM1-201ENST00000311351 SLC7A11Q9UPY5 501 aa13.39□□□□□ -0.27
LSM1-201ENST00000311351 SNTNA6NMZ2 147 aa13.38□□□□□ -0.27
LSM1-201ENST00000311351 F8VVB4 439 aa13.38□□□□□ -0.27
LSM1-201ENST00000311351 F8VWA3 439 aa13.38□□□□□ -0.27
LSM1-201ENST00000311351 GATBO75879 557 aaKnown RBP13.38□□□□□ -0.27
LSM1-201ENST00000311351 INMTO95050 263 aa13.38□□□□□ -0.27
LSM1-201ENST00000311351 HTR1AP08908 422 aa13.38□□□□□ -0.27
LSM1-201ENST00000311351 PRDX2P32119 198 aa13.38□□□□□ -0.27
LSM1-201ENST00000311351 ERVK11-1P61568 191 aa13.38□□□□□ -0.27
LSM1-201ENST00000311351 IL24Q13007 206 aa13.38□□□□□ -0.27
LSM1-201ENST00000311351 LHFPL3Q86UP9 236 aa13.38□□□□□ -0.27
LSM1-201ENST00000311351 CCDC54Q8NEL0 328 aa13.38□□□□□ -0.27
LSM1-201ENST00000311351 SLAMF9Q96A28 289 aa13.38□□□□□ -0.27
LSM1-201ENST00000311351 DMRTB1Q96MA1 342 aa13.38□□□□□ -0.27
LSM1-201ENST00000311351 ALG8Q9BVK2 526 aa13.38□□□□□ -0.27
LSM1-201ENST00000311351 PKIBQ9C010 78 aa13.38□□□□□ -0.27
LSM1-201ENST00000311351 NOX4Q9NPH5 578 aa13.38□□□□□ -0.27
LSM1-201ENST00000311351 C19orf12Q9NSK7 152 aa13.38□□□□□ -0.27
LSM1-201ENST00000311351 DSCAML1Q8TD84 2053 aa13.37□□□□□ -0.27
LSM1-201ENST00000311351 IGKV1-9A0A0C4DH69 117 aa13.37□□□□□ -0.27
LSM1-201ENST00000311351 MPZL2O60487 215 aa13.37□□□□□ -0.27
LSM1-201ENST00000311351 IGHA1P01876 353 aa13.37□□□□□ -0.27
LSM1-201ENST00000311351 FUT6P51993 359 aa13.37□□□□□ -0.27
LSM1-201ENST00000311351 ACTA2P62736 377 aa13.37□□□□□ -0.27
LSM1-201ENST00000311351 ACTG2P63267 376 aa13.37□□□□□ -0.27
LSM1-201ENST00000311351 FOXL1Q12952 345 aa13.37□□□□□ -0.27
LSM1-201ENST00000311351 CNN3Q15417 329 aaKnown RBP13.37□□□□□ -0.27
LSM1-201ENST00000311351 TMEM244Q5VVB8 128 aa13.37□□□□□ -0.27
LSM1-201ENST00000311351 FDX2Q6P4F2 183 aa13.37□□□□□ -0.27
LSM1-201ENST00000311351 C16orf87Q6PH81 154 aa13.37□□□□□ -0.27
LSM1-201ENST00000311351 KCTD20Q7Z5Y7 419 aa13.37□□□□□ -0.27
LSM1-201ENST00000311351 OR51A4Q8NGJ6 313 aa13.37□□□□□ -0.27
LSM1-201ENST00000311351 PP6455Q8WZ26 134 aa13.37□□□□□ -0.27
LSM1-201ENST00000311351 TNFRSF14Q92956 283 aa13.37□□□□□ -0.27
LSM1-201ENST00000311351 FGGYQ96C11 551 aa13.37□□□□□ -0.27
LSM1-201ENST00000311351 BORCS8Q96FH0 119 aa13.37□□□□□ -0.27
LSM1-201ENST00000311351 CEP19Q96LK0 163 aa13.37□□□□□ -0.27
LSM1-201ENST00000311351 CHIAQ9BZP6 476 aa13.37□□□□□ -0.27
LSM1-201ENST00000311351 ISG20L2Q9H9L3 353 aaKnown RBP13.37□□□□□ -0.27
LSM1-201ENST00000311351 SMPD3Q9NY59 655 aaPredicted RBP13.37□□□□□ -0.27
LSM1-201ENST00000311351 MTCH1Q9NZJ7 389 aa13.37□□□□□ -0.27
LSM1-201ENST00000311351 PCDHGB1Q9Y5G3 927 aa13.37□□□□□ -0.27
LSM1-201ENST00000311351 TRBV23-1A0A0A0MS06 115 aa13.36□□□□□ -0.27
LSM1-201ENST00000311351 FAM181BA6NEQ2 426 aa13.36□□□□□ -0.27
LSM1-201ENST00000311351 OR4C45A6NMZ5 311 aa13.36□□□□□ -0.27
LSM1-201ENST00000311351 M0R1W7 72 aa13.36□□□□□ -0.27
LSM1-201ENST00000311351 SLC1A7O00341 560 aa13.36□□□□□ -0.27
LSM1-201ENST00000311351 IGHV4-59P01825 116 aa13.36□□□□□ -0.27
LSM1-201ENST00000311351 ISG15P05161 165 aa13.36□□□□□ -0.27
LSM1-201ENST00000311351 ZNF20P17024 532 aa13.36□□□□□ -0.27
LSM1-201ENST00000311351 OMGP23515 440 aa13.36□□□□□ -0.27
LSM1-201ENST00000311351 POU3F4P49335 361 aa13.36□□□□□ -0.27
LSM1-201ENST00000311351 ALKBH1Q13686 389 aaKnown RBP13.36□□□□□ -0.27
LSM1-201ENST00000311351 GALEQ14376 348 aa13.36□□□□□ -0.27
LSM1-201ENST00000311351 SMN1Q16637 294 aaKnown RBP13.36□□□□□ -0.27
LSM1-201ENST00000311351 LRRC36Q1X8D7 754 aa13.36□□□□□ -0.27
LSM1-201ENST00000311351 METAP1DQ6UB28 335 aaPredicted RBP13.36□□□□□ -0.27
LSM1-201ENST00000311351 FIP1L1Q6UN15 594 aaKnown RBP13.36□□□□□ -0.27
LSM1-201ENST00000311351 SLC25A26Q70HW3 274 aa13.36□□□□□ -0.27
LSM1-201ENST00000311351 ZNF561Q8N587 486 aa13.36□□□□□ -0.27
LSM1-201ENST00000311351 OR4M1Q8NGD0 313 aa13.36□□□□□ -0.27
LSM1-201ENST00000311351 OR52I1Q8NGK6 324 aa13.36□□□□□ -0.27
LSM1-201ENST00000311351 C10orf35Q96D05 121 aa13.36□□□□□ -0.27
LSM1-201ENST00000311351 Q96MT0 163 aa13.36□□□□□ -0.27
LSM1-201ENST00000311351 ZNF649Q9BS31 505 aa13.36□□□□□ -0.27
LSM1-201ENST00000311351 C8orf4Q9NR00 106 aa13.36□□□□□ -0.27
LSM1-201ENST00000311351 ERVK13-1Q9NX77 482 aa13.36□□□□□ -0.27
LSM1-201ENST00000311351 IL36RNQ9UBH0 155 aa13.36□□□□□ -0.27
LSM1-201ENST00000311351 E9PI62 339 aa13.35□□□□□ -0.27
LSM1-201ENST00000311351 NPFFO15130 113 aa13.35□□□□□ -0.27
LSM1-201ENST00000311351 WBP4O75554 376 aaKnown RBP13.35□□□□□ -0.27
LSM1-201ENST00000311351 CLIC3O95833 236 aa13.35□□□□□ -0.27
LSM1-201ENST00000311351 FADS2O95864 444 aaKnown RBP13.35□□□□□ -0.27
LSM1-201ENST00000311351 SERPINA3P01011 423 aa13.35□□□□□ -0.27
LSM1-201ENST00000311351 KNG1P01042 644 aa13.35□□□□□ -0.27
LSM1-201ENST00000311351 AZGP1P25311 298 aaKnown RBP13.35□□□□□ -0.27
LSM1-201ENST00000311351 CCR9P51686 369 aa13.35□□□□□ -0.27
LSM1-201ENST00000311351 COL10A1Q03692 680 aa13.35□□□□□ -0.27
LSM1-201ENST00000311351 RAB40BQ12829 278 aa13.35□□□□□ -0.27
LSM1-201ENST00000311351 LPCAT4Q643R3 524 aa13.35□□□□□ -0.27
LSM1-201ENST00000311351 LDLRAD3Q86YD5 345 aa13.35□□□□□ -0.27
LSM1-201ENST00000311351 ZNF676Q8N7Q3 588 aa13.35□□□□□ -0.27
LSM1-201ENST00000311351 ZNF555Q8NEP9 628 aa13.35□□□□□ -0.27
LSM1-201ENST00000311351 OR13C3Q8NGS6 347 aa13.35□□□□□ -0.27
LSM1-201ENST00000311351 SSMEM1Q8WWF3 244 aa13.35□□□□□ -0.27
LSM1-201ENST00000311351 RFT1Q96AA3 541 aa13.35□□□□□ -0.27
LSM1-201ENST00000311351 METTL8Q9H825 291 aaKnown RBP13.35□□□□□ -0.27
LSM1-201ENST00000311351 HHLA2Q9UM44 414 aa13.35□□□□□ -0.27
LSM1-201ENST00000311351 MEX3AA1L020 520 aaKnown RBP13.34□□□□□ -0.27
LSM1-201ENST00000311351 H0YAE9 185 aa13.34□□□□□ -0.27
LSM1-201ENST00000311351 TK1P04183 234 aa13.34□□□□□ -0.27
LSM1-201ENST00000311351 PIPP12273 146 aaPredicted RBP13.34□□□□□ -0.27
LSM1-201ENST00000311351 CCL3L1P16619 93 aa13.34□□□□□ -0.27
LSM1-201ENST00000311351 ATF1P18846 271 aa13.34□□□□□ -0.27
LSM1-201ENST00000311351 MDKP21741 143 aaPredicted RBP13.34□□□□□ -0.27
LSM1-201ENST00000311351 PEX2P28328 305 aa13.34□□□□□ -0.27
LSM1-201ENST00000311351 SAA4P35542 130 aa13.34□□□□□ -0.27
LSM1-201ENST00000311351 RBP2P50120 134 aa13.34□□□□□ -0.27
LSM1-201ENST00000311351 RPL31P62899 125 aaKnown RBP13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms