RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 PTGFRP43088 359 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 RPL30P62888 115 aaKnown RBP12.43□□□□□ -0.42
CSPG4-201ENST00000308508 ARHGAP5-AS1Q96IT6 56 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 LAMB1P07942 1786 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 DICER1Q9UPY3 1922 aaKnown RBP12.43□□□□□ -0.42
CSPG4-201ENST00000308508 TMEM238LA0A1B0GVL6 79 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 A6NJY4 79 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 ISLRO14498 428 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 KLK8O60259 260 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 C5orf17Q8NAS9 161 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 MCHR2Q969V1 340 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 RNF186Q9NXI6 227 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 SLC22A20A6NK97 555 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 CTAG2O75638 210 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 ARG1P05089 322 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 SLC25A1P53007 311 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 PRSS36Q5K4E3 855 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 TMEM215Q68D42 235 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 C6orf201Q7Z4U5 140 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 NUDT8Q8WV74 236 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 TRMT61AQ96FX7 289 aaKnown RBP12.43□□□□□ -0.42
CSPG4-201ENST00000308508 IGHV3-20A0A0C4DH32 117 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 IGSF23A1L1A6 192 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 C11orf94C9JXX5 98 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 C12orf73Q69YU5 71 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 C6orf15Q6UXA7 325 aaPredicted RBP12.43□□□□□ -0.42
CSPG4-201ENST00000308508 D2HGDHQ8N465 521 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 MAST2Q6P0Q8 1798 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 B4GALT1P15291 398 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 SUMO3P55854 103 aaPredicted RBP12.43□□□□□ -0.42
CSPG4-201ENST00000308508 DLK1P80370 383 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 DUSP2Q05923 314 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 DPTQ07507 201 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 PTOV1Q86YD1 416 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 CACNG5Q9UF02 275 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 FNDC7Q5VTL7 733 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 MRGPREQ86SM8 312 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 GRAMD2BQ96HH9 432 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 GCSHP23434 173 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 ACVR1Q04771 509 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 BTLAQ7Z6A9 289 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 PIK3IP1Q96FE7 263 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 IDSB3KWA1 339 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 OR5AC1P0C628 307 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 RPS27P42677 84 aaKnown RBP12.42□□□□□ -0.42
CSPG4-201ENST00000308508 DYNLT3P51808 116 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 FUT7Q11130 342 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 LIAT1Q6ZQX7 453 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 THYN1Q9P016 225 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 ING1Q9UK53 422 aaPredicted RBP12.42□□□□□ -0.42
CSPG4-201ENST00000308508 LIPGQ9Y5X9 500 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 BRWD1Q9NSI6 2320 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 TMEM33P57088 247 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 TCTAP57738 103 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 PPIAP62937 165 aaKnown RBP12.42□□□□□ -0.42
CSPG4-201ENST00000308508 GNG3P63215 75 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 XAF1Q6GPH4 301 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 RGS7BPQ6MZT1 257 aaPredicted RBP12.42□□□□□ -0.42
CSPG4-201ENST00000308508 OR1F12Q8NHA8 337 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 PECRQ9BY49 303 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 SLC7A10Q9NS82 523 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 VAX2Q9UIW0 290 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 BSGP35613 385 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 BAHD1Q8TBE0 780 aaPredicted RBP12.42□□□□□ -0.42
CSPG4-201ENST00000308508 MYOZ3Q8TDC0 251 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 UPK1AO00322 258 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 HPXP02790 462 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 KISS1Q15726 138 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 IL20Q9NYY1 176 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 ZNF260Q3ZCT1 412 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 MVB12AQ96EY5 273 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 RHNO1Q9BSD3 238 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 FCMRO60667 390 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 P2RY1P47900 373 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 JMJD6Q6NYC1 403 aaPredicted RBP12.42□□□□□ -0.42
CSPG4-201ENST00000308508 HES7Q9BYE0 225 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 CCL26Q9Y258 94 aa12.42□□□□□ -0.42
CSPG4-201ENST00000308508 AGERQ15109 404 aa12.41□□□□□ -0.42
CSPG4-201ENST00000308508 ORAI1Q96D31 301 aa12.41□□□□□ -0.42
CSPG4-201ENST00000308508 LPAR5Q9H1C0 372 aa12.41□□□□□ -0.42
CSPG4-201ENST00000308508 M0R3E3 92 aa12.41□□□□□ -0.42
CSPG4-201ENST00000308508 P01737 135 aa12.41□□□□□ -0.42
CSPG4-201ENST00000308508 PYCR3Q53H96 274 aa12.41□□□□□ -0.42
CSPG4-201ENST00000308508 OR2A5Q96R48 311 aa12.41□□□□□ -0.42
CSPG4-201ENST00000308508 DOK1Q99704 481 aa12.41□□□□□ -0.42
CSPG4-201ENST00000308508 ZFP30Q9Y2G7 519 aa12.41□□□□□ -0.42
CSPG4-201ENST00000308508 CSN3P07498 182 aa12.41□□□□□ -0.42
CSPG4-201ENST00000308508 POU2F2P09086 479 aa12.41□□□□□ -0.42
CSPG4-201ENST00000308508 ZNF766Q5HY98 468 aa12.41□□□□□ -0.42
CSPG4-201ENST00000308508 ETFBKMTQ8IXQ9 262 aa12.41□□□□□ -0.42
CSPG4-201ENST00000308508 FBXL14Q8N1E6 418 aa12.41□□□□□ -0.42
CSPG4-201ENST00000308508 VN1R17PQ8TDU5 208 aa12.41□□□□□ -0.42
CSPG4-201ENST00000308508 ADAT3Q96EY9 351 aaPredicted RBP12.41□□□□□ -0.42
CSPG4-201ENST00000308508 TECRQ9NZ01 308 aaKnown RBP12.41□□□□□ -0.42
CSPG4-201ENST00000308508 THAP10Q9P2Z0 257 aaPredicted RBP12.41□□□□□ -0.42
CSPG4-201ENST00000308508 FUT9Q9Y231 359 aa12.41□□□□□ -0.42
CSPG4-201ENST00000308508 CYR61O00622 381 aa12.41□□□□□ -0.42
CSPG4-201ENST00000308508 APCSP02743 223 aa12.41□□□□□ -0.42
CSPG4-201ENST00000308508 ACP1P24666 158 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms