RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 ABCA11PQ4W5N1 156 aa14.46□□□□□ -0.09
VPS54-201ENST00000272322 PABPC1L2AQ5JQF8 200 aa14.46□□□□□ -0.09
VPS54-201ENST00000272322 PDSS1Q5T2R2 415 aa14.46□□□□□ -0.09
VPS54-201ENST00000272322 BAP18Q8IXM2 172 aa14.46□□□□□ -0.09
VPS54-201ENST00000272322 SIGLEC12Q96PQ1 595 aa14.46□□□□□ -0.09
VPS54-201ENST00000272322 WDR54Q9H977 334 aa14.46□□□□□ -0.09
VPS54-201ENST00000272322 CRIM1Q9NZV1 1036 aa14.46□□□□□ -0.09
VPS54-201ENST00000272322 GTF3C1Q12789 2109 aa14.46□□□□□ -0.1
VPS54-201ENST00000272322 TRAV39A0A0B4J263 110 aa14.46□□□□□ -0.1
VPS54-201ENST00000272322 FCGR2CP31995 323 aa14.46□□□□□ -0.1
VPS54-201ENST00000272322 RAC3P60763 192 aa14.46□□□□□ -0.1
VPS54-201ENST00000272322 SPIN3Q5JUX0 258 aa14.46□□□□□ -0.1
VPS54-201ENST00000272322 SPATA46Q5T0L3 261 aa14.46□□□□□ -0.1
VPS54-201ENST00000272322 DMXL2Q8TDJ6 3036 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 CDK2AP1O14519 115 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 MSTNO14793 375 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 RBP2P50120 134 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 LPCAT3Q6P1A2 487 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 PEG10Q86TG7 708 aaKnown RBP14.45□□□□□ -0.1
VPS54-201ENST00000272322 MYPOPQ86VE0 399 aaPredicted RBP14.45□□□□□ -0.1
VPS54-201ENST00000272322 CBLN2Q8IUK8 224 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 ARRDC1Q8N5I2 433 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 PIK3IP1Q96FE7 263 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 METTL9Q9H1A3 318 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 LOC102723996A0A087X1L8 192 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 F8W036 122 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 GP1BAP07359 652 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 BLOC1S1P78537 153 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 RPUSD3Q6P087 351 aaKnown RBP14.45□□□□□ -0.1
VPS54-201ENST00000272322 OVCH2Q7RTZ1 564 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 C1orf210Q8IVY1 113 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 ZNF488Q96MN9 340 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 FANCFQ9NPI8 374 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 C5orf49A4QMS7 147 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 VAMP5O95183 116 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 OMGP23515 440 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 IL32P24001 234 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 THBS4P35443 961 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 FAM27BQ5VT28 67 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 LYZL2Q7Z4W2 148 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 TUSC5Q8IXB3 177 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 PRR18Q8N4B5 295 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 TMEM54Q969K7 222 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 BSCL2Q96G97 398 aaPredicted RBP14.45□□□□□ -0.1
VPS54-201ENST00000272322 SLC25A32Q9H2D1 315 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.45□□□□□ -0.11e-6■■■■□ 24.6
VPS54-201ENST00000272322 TMEM38BQ9NVV0 291 aa14.45□□□□□ -0.1
VPS54-201ENST00000272322 FOXD3Q9UJU5 478 aaPredicted RBP14.45□□□□□ -0.1
VPS54-201ENST00000272322 F8VVB4 439 aa14.44□□□□□ -0.1
VPS54-201ENST00000272322 F8VWA3 439 aa14.44□□□□□ -0.1
VPS54-201ENST00000272322 ABCD4O14678 606 aa14.44□□□□□ -0.1
VPS54-201ENST00000272322 MRPL33O75394 65 aaKnown RBP14.44□□□□□ -0.1
VPS54-201ENST00000272322 OR5AC1P0C628 307 aa14.44□□□□□ -0.1
VPS54-201ENST00000272322 EDN3P14138 238 aa14.44□□□□□ -0.1
VPS54-201ENST00000272322 PRF1P14222 555 aa14.44□□□□□ -0.1
VPS54-201ENST00000272322 CPEB3Q8NE35 698 aaKnown RBP14.44□□□□□ -0.1
VPS54-201ENST00000272322 PRELID1Q9Y255 219 aa14.44□□□□□ -0.1
VPS54-201ENST00000272322 NOSIPQ9Y314 301 aaKnown RBP14.44□□□□□ -0.1
VPS54-201ENST00000272322 RFNGQ9Y644 331 aa14.44□□□□□ -0.1
VPS54-201ENST00000272322 NCKAP5O14513 1909 aa14.44□□□□□ -0.1
VPS54-201ENST00000272322 SCGNO76038 276 aa14.44□□□□□ -0.1
VPS54-201ENST00000272322 TPT1P13693 172 aaKnown RBP14.44□□□□□ -0.1
VPS54-201ENST00000272322 FPR2P25090 351 aa14.44□□□□□ -0.1
VPS54-201ENST00000272322 MAGEA5P43359 124 aa14.44□□□□□ -0.1
VPS54-201ENST00000272322 ZFP36L1Q07352 338 aaKnown RBP14.44□□□□□ -0.1
VPS54-201ENST00000272322 IGSF11Q5DX21 431 aa14.44□□□□□ -0.1
VPS54-201ENST00000272322 GGNQ86UU5 652 aa14.44□□□□□ -0.1
VPS54-201ENST00000272322 OR10AD1Q8NGE0 317 aa14.44□□□□□ -0.1
VPS54-201ENST00000272322 PP6455Q8WZ26 134 aa14.44□□□□□ -0.1
VPS54-201ENST00000272322 EMG1Q92979 244 aaKnown RBP14.44□□□□□ -0.1
VPS54-201ENST00000272322 OCSTAMPQ9BR26 566 aa14.44□□□□□ -0.1
VPS54-201ENST00000272322 SLC7A10Q9NS82 523 aa14.44□□□□□ -0.1
VPS54-201ENST00000272322 FOXJ2Q9P0K8 574 aa14.44□□□□□ -0.1
VPS54-201ENST00000272322 TNFSF12O43508 249 aa14.43□□□□□ -0.1
VPS54-201ENST00000272322 C1QL1O75973 258 aa14.43□□□□□ -0.1
VPS54-201ENST00000272322 NGFP01138 241 aa14.43□□□□□ -0.1
VPS54-201ENST00000272322 GSK3AP49840 483 aa14.43□□□□□ -0.1
VPS54-201ENST00000272322 TAS2R31P59538 309 aa14.43□□□□□ -0.1
VPS54-201ENST00000272322 SGPP2Q8IWX5 399 aa14.43□□□□□ -0.1
VPS54-201ENST00000272322 ADPRHL1Q8NDY3 354 aa14.43□□□□□ -0.1
VPS54-201ENST00000272322 MARC2Q969Z3 335 aa14.43□□□□□ -0.1
VPS54-201ENST00000272322 GUCD1Q96NT3 240 aa14.43□□□□□ -0.1
VPS54-201ENST00000272322 SMG1Q96Q15 3661 aaKnown RBP14.43□□□□□ -0.1
VPS54-201ENST00000272322 LRRC3CA6NJW4 275 aa14.43□□□□□ -0.1
VPS54-201ENST00000272322 CER1O95813 267 aa14.43□□□□□ -0.1
VPS54-201ENST00000272322 NAT2P11245 290 aa14.43□□□□□ -0.1
VPS54-201ENST00000272322 SLC25A4P12235 298 aa14.43□□□□□ -0.1
VPS54-201ENST00000272322 RBM39Q14498 530 aaKnown RBP14.43□□□□□ -0.1
VPS54-201ENST00000272322 OSGIN2Q9Y236 505 aa14.43□□□□□ -0.1
VPS54-201ENST00000272322 MED6O75586 246 aa14.43□□□□□ -0.1
VPS54-201ENST00000272322 IFNA2P01563 188 aa14.43□□□□□ -0.1
VPS54-201ENST00000272322 FHITP49789 147 aa14.43□□□□□ -0.1
VPS54-201ENST00000272322 GPM6AP51674 278 aa14.43□□□□□ -0.1
VPS54-201ENST00000272322 TAS2R46P59540 309 aa14.43□□□□□ -0.1
VPS54-201ENST00000272322 ARF1P84077 181 aaKnown RBP14.43□□□□□ -0.1
VPS54-201ENST00000272322 TAGLNQ01995 201 aaKnown RBP14.43□□□□□ -0.1
VPS54-201ENST00000272322 VAX1Q5SQQ9 334 aa14.43□□□□□ -0.1
VPS54-201ENST00000272322 OR2V1Q8NHB1 315 aa14.43□□□□□ -0.1
VPS54-201ENST00000272322 M1APQ8TC57 530 aa14.43□□□□□ -0.1
VPS54-201ENST00000272322 SLAMF9Q96A28 289 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms