RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 CBX1P83916 185 aa12.09□□□□□ -0.47
SYNE2-228ENST00000639659 SLC34A1Q06495 639 aa12.09□□□□□ -0.47
SYNE2-228ENST00000639659 CEACAM21Q3KPI0 293 aa12.09□□□□□ -0.47
SYNE2-228ENST00000639659 CYP2R1Q6VVX0 501 aa12.09□□□□□ -0.47
SYNE2-228ENST00000639659 KRT77Q7Z794 578 aa12.09□□□□□ -0.47
SYNE2-228ENST00000639659 ZNF561Q8N587 486 aa12.09□□□□□ -0.47
SYNE2-228ENST00000639659 C11orf42Q8N5U0 333 aa12.09□□□□□ -0.47
SYNE2-228ENST00000639659 ASCC1Q8N9N2 400 aaKnown RBP12.09□□□□□ -0.47
SYNE2-228ENST00000639659 OR13D1Q8NGV5 346 aa12.09□□□□□ -0.47
SYNE2-228ENST00000639659 CMC2Q9NRP2 79 aa12.09□□□□□ -0.47
SYNE2-228ENST00000639659 KLHDC2Q9Y2U9 406 aa12.09□□□□□ -0.47
SYNE2-228ENST00000639659 LRP12Q9Y561 859 aa12.09□□□□□ -0.47
SYNE2-228ENST00000639659 TCRBV4S1A1TA0A5B7 111 aa12.08□□□□□ -0.48
SYNE2-228ENST00000639659 OR5B21A6NL26 309 aa12.08□□□□□ -0.48
SYNE2-228ENST00000639659 VGLL3A8MV65 326 aa12.08□□□□□ -0.48
SYNE2-228ENST00000639659 GSC2O15499 205 aa12.08□□□□□ -0.48
SYNE2-228ENST00000639659 HSD17B1P14061 328 aa12.08□□□□□ -0.48
SYNE2-228ENST00000639659 HAAOP46952 286 aa12.08□□□□□ -0.48
SYNE2-228ENST00000639659 EDDM3BP56851 147 aa12.08□□□□□ -0.48
SYNE2-228ENST00000639659 OR12D2P58182 307 aa12.08□□□□□ -0.48
SYNE2-228ENST00000639659 RPS7P62081 194 aaKnown RBP12.08□□□□□ -0.48
SYNE2-228ENST00000639659 ZNF770Q6IQ21 691 aaPredicted RBP12.08□□□□□ -0.48
SYNE2-228ENST00000639659 PLBD1Q6P4A8 553 aa12.08□□□□□ -0.48
SYNE2-228ENST00000639659 POC1AQ8NBT0 407 aa12.08□□□□□ -0.48
SYNE2-228ENST00000639659 OTOSQ8NHW6 89 aa12.08□□□□□ -0.48
SYNE2-228ENST00000639659 NDNFQ8TB73 568 aa12.08□□□□□ -0.48
SYNE2-228ENST00000639659 CDRT15Q96T59 188 aa12.08□□□□□ -0.48
SYNE2-228ENST00000639659 TTTY10Q9BZA0 68 aa12.08□□□□□ -0.48
SYNE2-228ENST00000639659 WNT10AQ9GZT5 417 aa12.08□□□□□ -0.48
SYNE2-228ENST00000639659 GTF2A1LQ9UNN4 478 aa12.08□□□□□ -0.48
SYNE2-228ENST00000639659 PIGLQ9Y2B2 252 aa12.08□□□□□ -0.48
SYNE2-228ENST00000639659 SAMHD1Q9Y3Z3 626 aaKnown RBP12.08□□□□□ -0.48
SYNE2-228ENST00000639659 TBL2Q9Y4P3 447 aaKnown RBP12.08□□□□□ -0.48
SYNE2-228ENST00000639659 PRR23D1E9PI22 279 aaPredicted RBP12.07□□□□□ -0.48
SYNE2-228ENST00000639659 PRR23D2P0DMB1 279 aaPredicted RBP12.07□□□□□ -0.48
SYNE2-228ENST00000639659 H2AFXP16104 143 aaPredicted RBP12.07□□□□□ -0.48
SYNE2-228ENST00000639659 KRTAP10-11P60412 298 aa12.07□□□□□ -0.48
SYNE2-228ENST00000639659 ESRRGP62508 458 aa12.07□□□□□ -0.48
SYNE2-228ENST00000639659 CENPVQ7Z7K6 275 aaPredicted RBP12.07□□□□□ -0.48
SYNE2-228ENST00000639659 OR5A2Q8NGI9 324 aa12.07□□□□□ -0.48
SYNE2-228ENST00000639659 WIPF2Q8TF74 440 aaPredicted RBP12.07□□□□□ -0.48
SYNE2-228ENST00000639659 MALSU1Q96EH3 234 aa12.07□□□□□ -0.48
SYNE2-228ENST00000639659 FAM107BQ9H098 131 aa12.07□□□□□ -0.48
SYNE2-228ENST00000639659 REEP1Q9H902 201 aa12.07□□□□□ -0.48
SYNE2-228ENST00000639659 VNN3Q9NY84 501 aa12.07□□□□□ -0.48
SYNE2-228ENST00000639659 RASL12Q9NYN1 266 aa12.07□□□□□ -0.48
SYNE2-228ENST00000639659 FAM90A8PA6NJQ4 464 aa12.06□□□□□ -0.48
SYNE2-228ENST00000639659 ODF3BA8MYP8 253 aa12.06□□□□□ -0.48
SYNE2-228ENST00000639659 CLIC3O95833 236 aa12.06□□□□□ -0.48
SYNE2-228ENST00000639659 TK1P04183 234 aa12.06□□□□□ -0.48
SYNE2-228ENST00000639659 PRDX6P30041 224 aa12.06□□□□□ -0.48
SYNE2-228ENST00000639659 HMGA2P52926 109 aa12.06□□□□□ -0.48
SYNE2-228ENST00000639659 HCCSP53701 268 aa12.06□□□□□ -0.48
SYNE2-228ENST00000639659 RIPPLY1Q0D2K3 151 aa12.06□□□□□ -0.48
SYNE2-228ENST00000639659 EDDM3AQ14507 147 aa12.06□□□□□ -0.48
SYNE2-228ENST00000639659 LDLRAD2Q5SZI1 272 aa12.06□□□□□ -0.48
SYNE2-228ENST00000639659 ZNF684Q5T5D7 378 aa12.06□□□□□ -0.48
SYNE2-228ENST00000639659 ZNF454Q8N9F8 522 aa12.06□□□□□ -0.48
SYNE2-228ENST00000639659 OR51E1Q8TCB6 317 aa12.06□□□□□ -0.48
SYNE2-228ENST00000639659 CAPSLQ8WWF8 208 aa12.06□□□□□ -0.48
SYNE2-228ENST00000639659 WWC2-AS2Q96NR7 200 aa12.06□□□□□ -0.48
SYNE2-228ENST00000639659 NIPSNAP1Q9BPW8 284 aa12.06□□□□□ -0.48
SYNE2-228ENST00000639659 ELAC2Q9BQ52 826 aaKnown RBP12.06□□□□□ -0.48
SYNE2-228ENST00000639659 GPR84Q9NQS5 396 aa12.06□□□□□ -0.48
SYNE2-228ENST00000639659 GPR173Q9NS66 373 aa12.06□□□□□ -0.48
SYNE2-228ENST00000639659 ENPP5Q9UJA9 477 aa12.06□□□□□ -0.48
SYNE2-228ENST00000639659 LAMP5Q9UJQ1 280 aa12.06□□□□□ -0.48
SYNE2-228ENST00000639659 TMEM269A0A1B0GVZ9 245 aa12.05□□□□□ -0.48
SYNE2-228ENST00000639659 E9PQ18 207 aa12.05□□□□□ -0.48
SYNE2-228ENST00000639659 J3QT63 122 aa12.05□□□□□ -0.48
SYNE2-228ENST00000639659 INMTO95050 263 aa12.05□□□□□ -0.48
SYNE2-228ENST00000639659 NRASP01111 189 aa12.05□□□□□ -0.48
SYNE2-228ENST00000639659 MRPL3P09001 348 aaKnown RBP12.05□□□□□ -0.48
SYNE2-228ENST00000639659 PGA5P0DJD9 388 aa12.05□□□□□ -0.48
SYNE2-228ENST00000639659 ZNF728P0DKX0 622 aa12.05□□□□□ -0.48
SYNE2-228ENST00000639659 ATP6V1B2P21281 511 aa12.05□□□□□ -0.48
SYNE2-228ENST00000639659 CD83Q01151 205 aa12.05□□□□□ -0.48
SYNE2-228ENST00000639659 MICAQ29983 383 aa12.05□□□□□ -0.48
SYNE2-228ENST00000639659 ZNF626Q68DY1 528 aa12.05□□□□□ -0.48
SYNE2-228ENST00000639659 ASRGL1Q7L266 308 aa12.05□□□□□ -0.48
SYNE2-228ENST00000639659 GDPD3Q7L5L3 318 aa12.05□□□□□ -0.48
SYNE2-228ENST00000639659 PGAM4Q8N0Y7 254 aa12.05□□□□□ -0.48
SYNE2-228ENST00000639659 WFDC9Q8NEX5 89 aa12.05□□□□□ -0.48
SYNE2-228ENST00000639659 OR10G2Q8NGC3 310 aa12.05□□□□□ -0.48
SYNE2-228ENST00000639659 DPF1Q92782 380 aa12.05□□□□□ -0.48
SYNE2-228ENST00000639659 MYDGFQ969H8 173 aa12.05□□□□□ -0.48
SYNE2-228ENST00000639659 RCC1LQ96I51 464 aaKnown RBP12.05□□□□□ -0.48
SYNE2-228ENST00000639659 OR8B4Q96RC9 309 aa12.05□□□□□ -0.48
SYNE2-228ENST00000639659 MYLK2Q9H1R3 596 aa12.05□□□□□ -0.48
SYNE2-228ENST00000639659 CCDC134Q9H6E4 229 aa12.05□□□□□ -0.48
SYNE2-228ENST00000639659 POLDIP2Q9Y2S7 368 aa12.05□□□□□ -0.48
SYNE2-228ENST00000639659 TSSC4Q9Y5U2 329 aaPredicted RBP12.05□□□□□ -0.48
SYNE2-228ENST00000639659 A6NIN4 97 aa12.04□□□□□ -0.48
SYNE2-228ENST00000639659 SH2D7A6NKC9 451 aaPredicted RBP12.04□□□□□ -0.48
SYNE2-228ENST00000639659 C17orf98A8MV24 154 aa12.04□□□□□ -0.48
SYNE2-228ENST00000639659 IGHV1-8P0DP01 117 aa12.04□□□□□ -0.48
SYNE2-228ENST00000639659 CD24P25063 80 aa12.04□□□□□ -0.48
SYNE2-228ENST00000639659 DLX6P56179 175 aa12.04□□□□□ -0.48
SYNE2-228ENST00000639659 ACTA2P62736 377 aa12.04□□□□□ -0.48
SYNE2-228ENST00000639659 ACTG2P63267 376 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms