RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 TAF1LQ8IZX4 1826 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 A0A087WUU8 490 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 ARPC3O15145 178 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 SFT2D2O95562 160 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 EOMESO95936 686 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 H2BFMP0C1H6 154 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 PNMTP11086 282 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 LAMP2P13473 410 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 PMCHP20382 165 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 MPLP40238 635 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 GRK6P43250 576 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 P2RY1P47900 373 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 UBE2NP61088 152 aaKnown RBP5.12□□□□□ -1.59
SCN1A-216ENST00000637968 HLA-BQ31612 363 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 PRSS57Q6UWY2 283 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 GKN2Q86XP6 184 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 KLHDC8AQ8IYD2 350 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 CLEC1AQ8NC01 280 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 NOXO1Q8NFA2 376 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 OR52M1Q8NGK5 317 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 UBTD2Q8WUN7 234 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 EID2BQ96D98 161 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 OR6C1Q96RD1 312 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 GABRG3Q99928 467 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 AURKAIP1Q9NWT8 199 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-216ENST00000637968 IL17CQ9P0M4 197 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 LRIT1Q9P2V4 623 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 CGGBP1Q9UFW8 167 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-216ENST00000637968 TRAPPC2LQ9UL33 140 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 ZNF214Q9UL59 606 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-216ENST00000637968 KCNS2Q9ULS6 477 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 SLC22A13Q9Y226 551 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 MRPS16Q9Y3D3 137 aaKnown RBP5.12□□□□□ -1.59
SCN1A-216ENST00000637968 TIMM13Q9Y5L4 95 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-216ENST00000637968 COL16A1Q07092 1604 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-216ENST00000637968 PIKFYVEQ9Y2I7 2098 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 A0A1B0GW64 132 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 MEGF11A6BM72 1044 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 TNFRSF10CO14798 259 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 FFAR1O14842 300 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 MMP23AO75900 390 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 TCN2P20062 427 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 SNRPD1P62314 119 aaKnown RBP5.11□□□□□ -1.59
SCN1A-216ENST00000637968 COA6Q5JTJ3 125 aaKnown RBP5.11□□□□□ -1.59
SCN1A-216ENST00000637968 SBSNQ6UWP8 590 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 HFE2Q6ZVN8 426 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 TSEN54Q7Z6J9 526 aaKnown RBP5.11□□□□□ -1.59
SCN1A-216ENST00000637968 CSNK1A1LQ8N752 337 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 PSMG2Q969U7 264 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 KTI12Q96EK9 354 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-216ENST00000637968 GNRHR2Q96P88 292 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 A4GALTQ9NPC4 353 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 LHX3Q9UBR4 397 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 VSIG4Q9Y279 399 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 MED31Q9Y3C7 131 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 KCPQ6ZWJ8 1503 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 OTOFQ9HC10 1997 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 TRBV6-7A0A0A0MS04 114 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 TAPBPO15533 448 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 C1QL1O75973 258 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 GYPBP06028 91 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 FURINP09958 794 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 NTF3P20783 257 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 PRPH2P23942 346 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 OR1D2P34982 312 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 SHHQ15465 462 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 PCK2Q16822 640 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 LRRC73Q5JTD7 316 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 SPIN3Q5JUX0 258 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 FAM71F2Q6NXP2 309 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 TMEM156Q8N614 296 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 NINJ1Q92982 152 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 TPPP3Q9BW30 176 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 ZMAT3Q9HA38 289 aaKnown RBP5.11□□□□□ -1.59
SCN1A-216ENST00000637968 MANBALQ9NQG1 85 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 CUTCQ9NTM9 273 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 PLEKHJ1Q9NW61 149 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 PLEK2Q9NYT0 353 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 FCF1Q9Y324 198 aaKnown RBP5.11□□□□□ -1.59
SCN1A-216ENST00000637968 LRP12Q9Y561 859 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 ARL2-SNX15V9GYD0 113 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 SCN11AQ9UI33 1791 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 MDFIC2A0A1B0GVS7 189 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 C1orf226A1L170 272 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 A6NDN8 102 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 ZNF878C9JN71 531 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 LEFTY2O00292 366 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 GALR2O43603 387 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-216ENST00000637968 ANGPTL7O43827 346 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 ZNF205O95201 554 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 PPP1R3DO95685 299 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 DBHP09172 617 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 ANOS1P23352 680 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 DUSP1P28562 367 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 CCKBRP32239 447 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 SRP14P37108 136 aaKnown RBP5.11□□□□□ -1.59
SCN1A-216ENST00000637968 NPBWR2P48146 333 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 CHD3Q12873 2000 aaKnown RBP5.11□□□□□ -1.59
SCN1A-216ENST00000637968 DECR1Q16698 335 aa5.11□□□□□ -1.59
SCN1A-216ENST00000637968 ZNF787Q6DD87 383 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms