RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 SMARCD3Q6STE5 483 aa11.44□□□□□ -0.58
CLN3-249ENST00000636685 ACP7Q6ZNF0 438 aa11.44□□□□□ -0.58
CLN3-249ENST00000636685 FAM57BQ71RH2 274 aa11.44□□□□□ -0.58
CLN3-249ENST00000636685 ZNRF4Q8WWF5 429 aa11.44□□□□□ -0.58
CLN3-249ENST00000636685 ZNF488Q96MN9 340 aa11.44□□□□□ -0.58
CLN3-249ENST00000636685 TM2D3Q9BRN9 247 aa11.44□□□□□ -0.58
CLN3-249ENST00000636685 LINC00527Q9UJ94 153 aa11.44□□□□□ -0.58
CLN3-249ENST00000636685 RBP4P02753 201 aa11.43□□□□□ -0.58
CLN3-249ENST00000636685 HCKP08631 526 aa11.43□□□□□ -0.58
CLN3-249ENST00000636685 OMPP47874 163 aa11.43□□□□□ -0.58
CLN3-249ENST00000636685 IL18R1Q13478 541 aa11.43□□□□□ -0.58
CLN3-249ENST00000636685 TIGD4Q8IY51 512 aa11.43□□□□□ -0.58
CLN3-249ENST00000636685 OR4Q3Q8NH05 313 aa11.43□□□□□ -0.58
CLN3-249ENST00000636685 OR51I2Q9H344 312 aa11.43□□□□□ -0.58
CLN3-249ENST00000636685 IGHV2-26A0A0B4J1V2 119 aa11.42□□□□□ -0.58
CLN3-249ENST00000636685 ZNF732B4DXR9 585 aa11.42□□□□□ -0.58
CLN3-249ENST00000636685 CST4P01036 141 aa11.42□□□□□ -0.58
CLN3-249ENST00000636685 TK1P04183 234 aa11.42□□□□□ -0.58
CLN3-249ENST00000636685 SPARCP09486 303 aa11.42□□□□□ -0.58
CLN3-249ENST00000636685 CFL1P23528 166 aaKnown RBP11.42□□□□□ -0.58
CLN3-249ENST00000636685 BRS3P32247 399 aa11.42□□□□□ -0.58
CLN3-249ENST00000636685 EIF2B1Q14232 305 aaKnown RBP11.42□□□□□ -0.58
CLN3-249ENST00000636685 SNCBQ16143 134 aa11.42□□□□□ -0.58
CLN3-249ENST00000636685 ERICH5Q6P6B1 374 aa11.42□□□□□ -0.58
CLN3-249ENST00000636685 C16orf89Q6UX73 402 aa11.42□□□□□ -0.58
CLN3-249ENST00000636685 LCNL1Q6ZST4 164 aa11.42□□□□□ -0.58
CLN3-249ENST00000636685 PRSS45Q7RTY3 260 aa11.42□□□□□ -0.58
CLN3-249ENST00000636685 ZDHHC23Q8IYP9 409 aa11.42□□□□□ -0.58
CLN3-249ENST00000636685 FTMTQ8N4E7 242 aa11.42□□□□□ -0.58
CLN3-249ENST00000636685 OR51L1Q8NGJ5 315 aa11.42□□□□□ -0.58
CLN3-249ENST00000636685 OR4P4Q8NGL7 312 aa11.42□□□□□ -0.58
CLN3-249ENST00000636685 ZNF671Q8TAW3 534 aa11.42□□□□□ -0.58
CLN3-249ENST00000636685 CHPT1Q8WUD6 406 aa11.42□□□□□ -0.58
CLN3-249ENST00000636685 DCLRE1BQ9H816 532 aa11.42□□□□□ -0.58
CLN3-249ENST00000636685 ABCB9Q9NP78 766 aa11.42□□□□□ -0.58
CLN3-249ENST00000636685 BRD7Q9NPI1 651 aa11.42□□□□□ -0.58
CLN3-249ENST00000636685 DNAJC27Q9NZQ0 273 aa11.42□□□□□ -0.58
CLN3-249ENST00000636685 COMMD3-BMI1R4GMX3 469 aa11.42□□□□□ -0.58
CLN3-249ENST00000636685 KMT2AQ03164 3969 aa11.41□□□□□ -0.58
CLN3-249ENST00000636685 ZNF878C9JN71 531 aa11.41□□□□□ -0.58
CLN3-249ENST00000636685 ARPC3O15145 178 aa11.41□□□□□ -0.58
CLN3-249ENST00000636685 HTR1DP28221 377 aa11.41□□□□□ -0.58
CLN3-249ENST00000636685 ZNF121P58317 390 aaPredicted RBP11.41□□□□□ -0.58
CLN3-249ENST00000636685 SNAPC1Q16533 368 aa11.41□□□□□ -0.58
CLN3-249ENST00000636685 SMIM21Q3B7S5 101 aa11.41□□□□□ -0.58
CLN3-249ENST00000636685 PROKR2Q8NFJ6 384 aa11.41□□□□□ -0.58
CLN3-249ENST00000636685 OR8U1Q8NH10 309 aa11.41□□□□□ -0.58
CLN3-249ENST00000636685 FANK1Q8TC84 345 aa11.41□□□□□ -0.58
CLN3-249ENST00000636685 AQP3Q92482 292 aa11.41□□□□□ -0.58
CLN3-249ENST00000636685 OR8B4Q96RC9 309 aa11.41□□□□□ -0.58
CLN3-249ENST00000636685 ELAC2Q9BQ52 826 aaKnown RBP11.41□□□□□ -0.58
CLN3-249ENST00000636685 IFT27Q9BW83 186 aa11.41□□□□□ -0.58
CLN3-249ENST00000636685 OR10A2Q9H208 303 aa11.41□□□□□ -0.58
CLN3-249ENST00000636685 RASL12Q9NYN1 266 aa11.41□□□□□ -0.58
CLN3-249ENST00000636685 HHLA2Q9UM44 414 aa11.41□□□□□ -0.58
CLN3-249ENST00000636685 M0QZK8 103 aa11.4□□□□□ -0.58
CLN3-249ENST00000636685 SNX3O60493 162 aa11.4□□□□□ -0.58
CLN3-249ENST00000636685 RPLP1P05386 114 aaKnown RBP11.4□□□□□ -0.58
CLN3-249ENST00000636685 MYF6P23409 242 aa11.4□□□□□ -0.58
CLN3-249ENST00000636685 SLC6A6P31641 620 aa11.4□□□□□ -0.58
CLN3-249ENST00000636685 GRB2P62993 217 aaKnown RBP11.4□□□□□ -0.58
CLN3-249ENST00000636685 GNG3P63215 75 aa11.4□□□□□ -0.58
CLN3-249ENST00000636685 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.4□□□□□ -0.58
CLN3-249ENST00000636685 CYLC2Q14093 348 aaPredicted RBP11.4□□□□□ -0.58
CLN3-249ENST00000636685 KIR2DS1Q14954 304 aa11.4□□□□□ -0.58
CLN3-249ENST00000636685 KIAA2026Q5HYC2 2103 aa11.4□□□□□ -0.58
CLN3-249ENST00000636685 SLC35F1Q5T1Q4 408 aa11.4□□□□□ -0.58
CLN3-249ENST00000636685 HAGHLQ6PII5 290 aaPredicted RBP11.4□□□□□ -0.58
CLN3-249ENST00000636685 TCF23Q7RTU1 214 aa11.4□□□□□ -0.58
CLN3-249ENST00000636685 BATF2Q8N1L9 274 aa11.4□□□□□ -0.58
CLN3-249ENST00000636685 ZNF676Q8N7Q3 588 aa11.4□□□□□ -0.58
CLN3-249ENST00000636685 DDB2Q92466 427 aa11.4□□□□□ -0.58
CLN3-249ENST00000636685 RNFT2Q96EX2 444 aa11.4□□□□□ -0.58
CLN3-249ENST00000636685 PGAM5Q96HS1 289 aa11.4□□□□□ -0.58
CLN3-249ENST00000636685 ZNF714Q96N38 554 aa11.4□□□□□ -0.58
CLN3-249ENST00000636685 HIST1H2AAQ96QV6 131 aa11.4□□□□□ -0.58
CLN3-249ENST00000636685 CLEC7AQ9BXN2 247 aa11.4□□□□□ -0.58
CLN3-249ENST00000636685 OR52D1Q9H346 318 aa11.4□□□□□ -0.58
CLN3-249ENST00000636685 ANKRD19PQ9H560 264 aa11.4□□□□□ -0.58
CLN3-249ENST00000636685 OR14J1Q9UGF5 321 aa11.4□□□□□ -0.58
CLN3-249ENST00000636685 SESN1Q9Y6P5 492 aa11.4□□□□□ -0.58
CLN3-249ENST00000636685 DHRS12A0PJE2 317 aa11.39□□□□□ -0.59
CLN3-249ENST00000636685 TRIM64CA6NLI5 447 aa11.39□□□□□ -0.59
CLN3-249ENST00000636685 SERPINE3A8MV23 424 aa11.39□□□□□ -0.59
CLN3-249ENST00000636685 FXYD1O00168 92 aa11.39□□□□□ -0.59
CLN3-249ENST00000636685 LDLRAD4O15165 306 aa11.39□□□□□ -0.59
CLN3-249ENST00000636685 HSD11B1P28845 292 aa11.39□□□□□ -0.59
CLN3-249ENST00000636685 EDDM3BP56851 147 aa11.39□□□□□ -0.59
CLN3-249ENST00000636685 SLC35B1P78383 322 aa11.39□□□□□ -0.59
CLN3-249ENST00000636685 FGD3Q5JSP0 725 aa11.39□□□□□ -0.59
CLN3-249ENST00000636685 CEP78Q5JTW2 689 aa11.39□□□□□ -0.59
CLN3-249ENST00000636685 C10orf67Q8IYJ2 551 aa11.39□□□□□ -0.59
CLN3-249ENST00000636685 COMMD1Q8N668 190 aa11.39□□□□□ -0.59
CLN3-249ENST00000636685 POC1AQ8NBT0 407 aa11.39□□□□□ -0.59
CLN3-249ENST00000636685 OR8J3Q8NGG0 315 aa11.39□□□□□ -0.59
CLN3-249ENST00000636685 SH3GL1Q99961 368 aa11.39□□□□□ -0.59
CLN3-249ENST00000636685 TMEM133Q9H2Q1 129 aa11.39□□□□□ -0.59
CLN3-249ENST00000636685 PAPOLBQ9NRJ5 636 aaKnown RBP11.39□□□□□ -0.59
CLN3-249ENST00000636685 DPM3Q9P2X0 92 aa11.39□□□□□ -0.59
CLN3-249ENST00000636685 ARL2BPQ9Y2Y0 163 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms