RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 PLCXD3Q63HM9 321 aa11.77□□□□□ -0.53
PNKP-218ENST00000625299 ZNF626Q68DY1 528 aa11.77□□□□□ -0.53
PNKP-218ENST00000625299 HACD2Q6Y1H2 254 aa11.77□□□□□ -0.53
PNKP-218ENST00000625299 RASSF6Q6ZTQ3 369 aa11.77□□□□□ -0.53
PNKP-218ENST00000625299 SHFQ7M4L6 423 aa11.77□□□□□ -0.53
PNKP-218ENST00000625299 OR2T33Q8NG76 320 aa11.77□□□□□ -0.53
PNKP-218ENST00000625299 OR4X2Q8NGF9 303 aa11.77□□□□□ -0.53
PNKP-218ENST00000625299 THEM6Q8WUY1 208 aa11.77□□□□□ -0.53
PNKP-218ENST00000625299 SPAG4Q9NPE6 437 aa11.77□□□□□ -0.53
PNKP-218ENST00000625299 RASL12Q9NYN1 266 aa11.77□□□□□ -0.53
PNKP-218ENST00000625299 TAS2R1Q9NYW7 299 aa11.77□□□□□ -0.53
PNKP-218ENST00000625299 C17orf98A8MV24 154 aa11.76□□□□□ -0.53
PNKP-218ENST00000625299 GASTP01350 101 aa11.76□□□□□ -0.53
PNKP-218ENST00000625299 TK1P04183 234 aa11.76□□□□□ -0.53
PNKP-218ENST00000625299 LYNP07948 512 aa11.76□□□□□ -0.53
PNKP-218ENST00000625299 RNF144BQ7Z419 303 aa11.76□□□□□ -0.53
PNKP-218ENST00000625299 POC1AQ8NBT0 407 aa11.76□□□□□ -0.53
PNKP-218ENST00000625299 NDNFQ8TB73 568 aa11.76□□□□□ -0.53
PNKP-218ENST00000625299 CAPSLQ8WWF8 208 aa11.76□□□□□ -0.53
PNKP-218ENST00000625299 ZNF649Q9BS31 505 aa11.76□□□□□ -0.53
PNKP-218ENST00000625299 GPR61Q9BZJ8 451 aa11.76□□□□□ -0.53
PNKP-218ENST00000625299 GORASP2Q9H8Y8 452 aa11.76□□□□□ -0.53
PNKP-218ENST00000625299 VIPAS39Q9H9C1 493 aa11.76□□□□□ -0.53
PNKP-218ENST00000625299 BAIAP2Q9UQB8 552 aa11.76□□□□□ -0.53
PNKP-218ENST00000625299 OR5B21A6NL26 309 aa11.75□□□□□ -0.53
PNKP-218ENST00000625299 H3BUI4 141 aa11.75□□□□□ -0.53
PNKP-218ENST00000625299 TNFRSF11BO00300 401 aa11.75□□□□□ -0.53
PNKP-218ENST00000625299 NXPH2O95156 264 aa11.75□□□□□ -0.53
PNKP-218ENST00000625299 LPLP06858 475 aa11.75□□□□□ -0.53
PNKP-218ENST00000625299 MAP2K3P46734 347 aa11.75□□□□□ -0.53
PNKP-218ENST00000625299 DYNLT3P51808 116 aa11.75□□□□□ -0.53
PNKP-218ENST00000625299 DLX6P56179 175 aa11.75□□□□□ -0.53
PNKP-218ENST00000625299 EDDM3BP56851 147 aa11.75□□□□□ -0.53
PNKP-218ENST00000625299 PSMA6P60900 246 aaKnown RBP11.75□□□□□ -0.53
PNKP-218ENST00000625299 LCN8Q6JVE9 175 aa11.75□□□□□ -0.53
PNKP-218ENST00000625299 C10orf99Q6UWK7 81 aa11.75□□□□□ -0.53
PNKP-218ENST00000625299 CALHM1Q8IU99 346 aa11.75□□□□□ -0.53
PNKP-218ENST00000625299 LINC00482Q8N8I6 264 aa11.75□□□□□ -0.53
PNKP-218ENST00000625299 ASCC1Q8N9N2 400 aaKnown RBP11.75□□□□□ -0.53
PNKP-218ENST00000625299 AQP11Q8NBQ7 271 aa11.75□□□□□ -0.53
PNKP-218ENST00000625299 OR11H6Q8NGC7 330 aa11.75□□□□□ -0.53
PNKP-218ENST00000625299 OR5A2Q8NGI9 324 aa11.75□□□□□ -0.53
PNKP-218ENST00000625299 NSMCE2Q96MF7 247 aa11.75□□□□□ -0.53
PNKP-218ENST00000625299 OR51V1Q9H2C8 321 aa11.75□□□□□ -0.53
PNKP-218ENST00000625299 NIPAL2Q9H841 368 aa11.75□□□□□ -0.53
PNKP-218ENST00000625299 LYVE1Q9Y5Y7 322 aa11.75□□□□□ -0.53
PNKP-218ENST00000625299 U3KQK5 164 aa11.75□□□□□ -0.53
PNKP-218ENST00000625299 SH2D7A6NKC9 451 aaPredicted RBP11.74□□□□□ -0.53
PNKP-218ENST00000625299 SELENOFO60613 162 aa11.74□□□□□ -0.53
PNKP-218ENST00000625299 CCNB2O95067 398 aa11.74□□□□□ -0.53
PNKP-218ENST00000625299 PGA5P0DJD9 388 aa11.74□□□□□ -0.53
PNKP-218ENST00000625299 ZNF728P0DKX0 622 aa11.74□□□□□ -0.53
PNKP-218ENST00000625299 IGHV1-8P0DP01 117 aa11.74□□□□□ -0.53
PNKP-218ENST00000625299 CD24P25063 80 aa11.74□□□□□ -0.53
PNKP-218ENST00000625299 AZGP1P25311 298 aaKnown RBP11.74□□□□□ -0.53
PNKP-218ENST00000625299 HAAOP46952 286 aa11.74□□□□□ -0.53
PNKP-218ENST00000625299 ACTA2P62736 377 aa11.74□□□□□ -0.53
PNKP-218ENST00000625299 ACTG2P63267 376 aa11.74□□□□□ -0.53
PNKP-218ENST00000625299 ACTC1P68032 377 aa11.74□□□□□ -0.53
PNKP-218ENST00000625299 ACTA1P68133 377 aa11.74□□□□□ -0.53
PNKP-218ENST00000625299 PPP1R8Q12972 351 aaKnown RBP11.74□□□□□ -0.53
PNKP-218ENST00000625299 DCTN2Q13561 401 aaKnown RBP11.74□□□□□ -0.53
PNKP-218ENST00000625299 ABCA11PQ4W5N1 156 aa11.74□□□□□ -0.53
PNKP-218ENST00000625299 ZNF770Q6IQ21 691 aaPredicted RBP11.74□□□□□ -0.53
PNKP-218ENST00000625299 MRPL41Q8IXM3 137 aaKnown RBP11.74□□□□□ -0.53
PNKP-218ENST00000625299 BCAS4Q8TDM0 211 aa11.74□□□□□ -0.53
PNKP-218ENST00000625299 OR8B4Q96RC9 309 aa11.74□□□□□ -0.53
PNKP-218ENST00000625299 IL1RAPQ9NPH3 570 aa11.74□□□□□ -0.53
PNKP-218ENST00000625299 MAGEL2Q9UJ55 1249 aa11.74□□□□□ -0.53
PNKP-218ENST00000625299 PCDHGB5Q9Y5G0 923 aa11.74□□□□□ -0.53
PNKP-218ENST00000625299 GSC2O15499 205 aa11.73□□□□□ -0.53
PNKP-218ENST00000625299 CCDC22O60826 627 aa11.73□□□□□ -0.53
PNKP-218ENST00000625299 KRT36O76013 467 aa11.73□□□□□ -0.53
PNKP-218ENST00000625299 CBX1P83916 185 aa11.73□□□□□ -0.53
PNKP-218ENST00000625299 RIPPLY1Q0D2K3 151 aa11.73□□□□□ -0.53
PNKP-218ENST00000625299 HDXQ7Z353 690 aa11.73□□□□□ -0.53
PNKP-218ENST00000625299 IQCF1Q8N6M8 205 aa11.73□□□□□ -0.53
PNKP-218ENST00000625299 OTOSQ8NHW6 89 aa11.73□□□□□ -0.53
PNKP-218ENST00000625299 DSCAML1Q8TD84 2053 aa11.73□□□□□ -0.53
PNKP-218ENST00000625299 AKR1E2Q96JD6 320 aa11.73□□□□□ -0.53
PNKP-218ENST00000625299 CMC2Q9NRP2 79 aa11.73□□□□□ -0.53
PNKP-218ENST00000625299 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.73□□□□□ -0.53
PNKP-218ENST00000625299 PIGLQ9Y2B2 252 aa11.73□□□□□ -0.53
PNKP-218ENST00000625299 KLHDC2Q9Y2U9 406 aa11.73□□□□□ -0.53
PNKP-218ENST00000625299 RYR2Q92736 4967 aa11.72□□□□□ -0.53
PNKP-218ENST00000625299 J3QT63 122 aa11.72□□□□□ -0.53
PNKP-218ENST00000625299 ARPC2O15144 300 aa11.72□□□□□ -0.53
PNKP-218ENST00000625299 DNAJC8O75937 253 aaPredicted RBP11.72□□□□□ -0.53
PNKP-218ENST00000625299 COL10A1Q03692 680 aa11.72□□□□□ -0.53
PNKP-218ENST00000625299 EDDM3AQ14507 147 aa11.72□□□□□ -0.53
PNKP-218ENST00000625299 C9orf152Q5JTZ5 239 aa11.72□□□□□ -0.53
PNKP-218ENST00000625299 ZNF684Q5T5D7 378 aa11.72□□□□□ -0.53
PNKP-218ENST00000625299 MINOS1Q5TGZ0 78 aa11.72□□□□□ -0.53
PNKP-218ENST00000625299 GDPD3Q7L5L3 318 aa11.72□□□□□ -0.53
PNKP-218ENST00000625299 KRT77Q7Z794 578 aa11.72□□□□□ -0.53
PNKP-218ENST00000625299 PIGWQ7Z7B1 504 aa11.72□□□□□ -0.53
PNKP-218ENST00000625299 ZNF676Q8N7Q3 588 aa11.72□□□□□ -0.53
PNKP-218ENST00000625299 ZNF454Q8N9F8 522 aa11.72□□□□□ -0.53
PNKP-218ENST00000625299 OR51D1Q8NGF3 324 aa11.72□□□□□ -0.53
PNKP-218ENST00000625299 TEX47Q8TBZ9 253 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms