RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 DUX4L3P0CJ86 424 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 DUX4L4P0CJ87 422 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 DUX4L5P0CJ88 424 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 DUX4L6P0CJ89 424 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 DUX4L7P0CJ90 424 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 CD28P10747 220 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 PSG2P11465 335 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 HOXB6P17509 224 aaKnown RBP5.09□□□□□ -1.59
CUX1-220ENST00000607092 AMY2BP19961 511 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 BRS3P32247 399 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 DCTDP32321 178 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 OPRL1P41146 370 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 BMXP51813 675 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 HMGA2P52926 109 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 ZNF121P58317 390 aaPredicted RBP5.09□□□□□ -1.59
CUX1-220ENST00000607092 ACTR3P61158 418 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 PSME3P61289 254 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 CD83Q01151 205 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 RIPPLY1Q0D2K3 151 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 CEACAM21Q3KPI0 293 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 DEFB121Q5J5C9 76 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 LCN8Q6JVE9 175 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 C8orf82Q6P1X6 216 aaPredicted RBP5.09□□□□□ -1.59
CUX1-220ENST00000607092 KCTD18Q6PI47 426 aaPredicted RBP5.09□□□□□ -1.59
CUX1-220ENST00000607092 DUX4L9Q6RFH8 374 aaPredicted RBP5.09□□□□□ -1.59
CUX1-220ENST00000607092 UNQ9370/PRO34162Q6UXP9 181 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 KRT74Q7RTS7 529 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 MKXQ8IYA7 352 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 PGAM4Q8N0Y7 254 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 LILRB2Q8N423 598 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 PNKDQ8N490 385 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 SLC37A3Q8NCC5 494 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 PIGCQ92535 297 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 RORBQ92753 470 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 RPL3LQ92901 407 aaKnown RBP5.09□□□□□ -1.59
CUX1-220ENST00000607092 CREB3L1Q96BA8 519 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 NSMCE2Q96MF7 247 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 CITED2Q99967 270 aaPredicted RBP5.09□□□□□ -1.59
CUX1-220ENST00000607092 B9D2Q9BPU9 175 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 THTPAQ9BU02 230 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 ABHD6Q9BV23 337 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 TSSK6Q9BXA6 273 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 NMNAT2Q9BZQ4 307 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 WDR13Q9H1Z4 485 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 FN3KQ9H479 309 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 ZNF702PQ9H963 129 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 SNTG1Q9NSN8 517 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 ADA2Q9NZK5 511 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 DUX4Q9UBX2 424 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 GLS2Q9UI32 602 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 ZNF222Q9UK12 451 aa5.09□□□□□ -1.59
CUX1-220ENST00000607092 RYR3Q15413 4870 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 IGKV1D-17A0A075B6S4 117 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 ELOA3CA0A087WX78 387 aaPredicted RBP5.08□□□□□ -1.6
CUX1-220ENST00000607092 TCRBV4S1A1TA0A5B7 111 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 A6NDX4 124 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 ZNF732B4DXR9 585 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 TNFRSF11BO00300 401 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 PRODHO43272 600 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 CHST1O43916 411 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 NOS1APO75052 506 aaPredicted RBP5.08□□□□□ -1.6
CUX1-220ENST00000607092 ZNF254O75437 659 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 RHBDL1O75783 438 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 DIRAS1O95057 198 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 CCNB2O95067 398 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 ZFPL1O95159 310 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 ZNF728P0DKX0 622 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 IGLL1P15814 213 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 NCK1P16333 377 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 COX7A1P24310 79 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 PRDX2P32119 198 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 RPS27P42677 84 aaKnown RBP5.08□□□□□ -1.6
CUX1-220ENST00000607092 GPM6AP51674 278 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 GMFBP60983 142 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 HOXA4Q00056 320 aaPredicted RBP5.08□□□□□ -1.6
CUX1-220ENST00000607092 MEF2CQ06413 473 aaPredicted RBP5.08□□□□□ -1.6
CUX1-220ENST00000607092 CRMP1Q14194 572 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 ZNF684Q5T5D7 378 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 ZNF626Q68DY1 528 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 TMEM200BQ69YZ2 307 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 ZNF770Q6IQ21 691 aaPredicted RBP5.08□□□□□ -1.6
CUX1-220ENST00000607092 HCP5Q6MZN7 132 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 GDPD3Q7L5L3 318 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 PRSS45Q7RTY3 260 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 CENPVQ7Z7K6 275 aaPredicted RBP5.08□□□□□ -1.6
CUX1-220ENST00000607092 ERI1Q8IV48 349 aaKnown RBP5.08□□□□□ -1.6
CUX1-220ENST00000607092 FGFRL1Q8N441 504 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 POC1AQ8NBT0 407 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 ZNRF1Q8ND25 227 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 OR5AU1Q8NGC0 362 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 OR11H6Q8NGC7 330 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 OR51L1Q8NGJ5 315 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 OR2T27Q8NH04 317 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 OTOSQ8NHW6 89 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 TEX47Q8TBZ9 253 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 PIFOQ8TCI5 191 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 WIPF2Q8TF74 440 aaPredicted RBP5.08□□□□□ -1.6
CUX1-220ENST00000607092 AQP3Q92482 292 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 STMN2Q93045 179 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 SEH1LQ96EE3 360 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms