RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 ZNF529Q6P280 563 aa11.83□□□□□ -0.52
SHKBP1-217ENST00000598558 DCDC5Q6ZRR9 648 aa11.83□□□□□ -0.52
SHKBP1-217ENST00000598558 ZNF573Q86YE8 665 aa11.83□□□□□ -0.52
SHKBP1-217ENST00000598558 PARP16Q8N5Y8 322 aa11.83□□□□□ -0.52
SHKBP1-217ENST00000598558 OR51A2Q8NGJ7 313 aa11.83□□□□□ -0.52
SHKBP1-217ENST00000598558 HAVCR2Q8TDQ0 301 aa11.83□□□□□ -0.52
SHKBP1-217ENST00000598558 NEIL1Q96FI4 390 aaPredicted RBP11.83□□□□□ -0.52
SHKBP1-217ENST00000598558 NKX3-1Q99801 234 aaPredicted RBP11.83□□□□□ -0.52
SHKBP1-217ENST00000598558 TRIM36Q9NQ86 728 aa11.83□□□□□ -0.52
SHKBP1-217ENST00000598558 MTCH1Q9NZJ7 389 aa11.83□□□□□ -0.52
SHKBP1-217ENST00000598558 MIOXQ9UGB7 285 aa11.83□□□□□ -0.52
SHKBP1-217ENST00000598558 SLC7A11Q9UPY5 501 aa11.83□□□□□ -0.52
SHKBP1-217ENST00000598558 DHDHQ9UQ10 334 aa11.83□□□□□ -0.52
SHKBP1-217ENST00000598558 ERGIC3Q9Y282 383 aa11.83□□□□□ -0.52
SHKBP1-217ENST00000598558 ZNF281Q9Y2X9 895 aa11.83□□□□□ -0.52
SHKBP1-217ENST00000598558 SVEP1Q4LDE5 3571 aa11.83□□□□□ -0.52
SHKBP1-217ENST00000598558 NF1P21359 2839 aa11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 TRAV38-1A0A0B4J264 116 aa11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 MYL12BO14950 172 aa11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 ADAM20O43506 726 aa11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 RGS10O43665 173 aa11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 NOS1APO75052 506 aaPredicted RBP11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 CRLF1O75462 422 aa11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 GATBO75879 557 aaKnown RBP11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 PLATP00750 562 aa11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 SERPINA3P01011 423 aa11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 PGA5P0DJD9 388 aa11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 CELP19835 753 aa11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 ERVK11-1P61568 191 aa11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 INSL4Q14641 139 aa11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 RBM48Q5RL73 367 aaKnown RBP11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 WDR25Q64LD2 544 aaPredicted RBP11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 POC1AQ8NBT0 407 aa11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 DNAAF1Q8NEP3 725 aa11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 OR51F2Q8NH61 342 aa11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 ANGPTL6Q8NI99 470 aa11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 ZNF671Q8TAW3 534 aa11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 GPR148Q8TDV2 347 aa11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 TSEN15Q8WW01 171 aaKnown RBP11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 RFT1Q96AA3 541 aa11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 DACT3Q96B18 629 aaPredicted RBP11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 NRIP2Q9BQI9 281 aa11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 ZCCHC4Q9H5U6 513 aa11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 TAS2R4Q9NYW5 299 aa11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 METRNQ9UJH8 293 aa11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 KCNS2Q9ULS6 477 aa11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 POLR3KQ9Y2Y1 108 aaPredicted RBP11.82□□□□□ -0.52
SHKBP1-217ENST00000598558 IGKV1D-17A0A075B6S4 117 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 IGKV1-12A0A0C4DH73 117 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 A0A1W2PPK0 400 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 A8MXK9 166 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 PIN1P1O15428 100 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 IGKV1D-12P01611 117 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 RPSAP08865 295 aaKnown RBP11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 PSG2P11465 335 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 MUC1P15941 1255 aaPredicted RBP11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 GLRA1P23415 457 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 NPBWR2P48146 333 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 PITPNBP48739 271 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 GP2P55259 537 aaKnown RBP11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 ACSM1Q08AH1 577 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 IL24Q13007 206 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 SPHARQ15513 63 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 MICBQ29980 383 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 FAM120AOSQ5T036 256 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 ATPAF1Q5TC12 328 aaPredicted RBP11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 ACP7Q6ZNF0 438 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 PRSS48Q7RTY5 328 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 GLCCI1Q86VQ1 547 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 SERPINA12Q8IW75 414 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 FAM216BQ8N7L0 139 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 SLAMF9Q96A28 289 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 BORCS8Q96FH0 119 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 MND1Q9BWT6 205 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 TMPRSS13Q9BYE2 586 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 PKIBQ9C010 78 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 CCDC90BQ9GZT6 254 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 TMEM160Q9NX00 188 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 KAAG1Q9UBP8 84 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 OPN4Q9UHM6 478 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 ZNF222Q9UK12 451 aa11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 NSD1Q96L73 2696 aaPredicted RBP11.81□□□□□ -0.52
SHKBP1-217ENST00000598558 TRAV8-7A0A075B6U6 113 aa11.8□□□□□ -0.52
SHKBP1-217ENST00000598558 TRBV5-7A0A0A0MS05 114 aa11.8□□□□□ -0.52
SHKBP1-217ENST00000598558 TRAV20A0A0B4J274 112 aa11.8□□□□□ -0.52
SHKBP1-217ENST00000598558 C22orf46C9J442 243 aa11.8□□□□□ -0.52
SHKBP1-217ENST00000598558 DVL1O14640 695 aa11.8□□□□□ -0.52
SHKBP1-217ENST00000598558 SPRY1O43609 319 aaPredicted RBP11.8□□□□□ -0.52
SHKBP1-217ENST00000598558 FOXH1O75593 365 aa11.8□□□□□ -0.52
SHKBP1-217ENST00000598558 CD1AP06126 327 aa11.8□□□□□ -0.52
SHKBP1-217ENST00000598558 ACAA1P09110 424 aaPredicted RBP11.8□□□□□ -0.52
SHKBP1-217ENST00000598558 OCM2P0CE71 109 aa11.8□□□□□ -0.52
SHKBP1-217ENST00000598558 CALCBP10092 127 aa11.8□□□□□ -0.52
SHKBP1-217ENST00000598558 CEBPDP49716 269 aaPredicted RBP11.8□□□□□ -0.52
SHKBP1-217ENST00000598558 RBP2P50120 134 aa11.8□□□□□ -0.52
SHKBP1-217ENST00000598558 ATP1B3P54709 279 aa11.8□□□□□ -0.52
SHKBP1-217ENST00000598558 MTCP1P56278 107 aa11.8□□□□□ -0.52
SHKBP1-217ENST00000598558 CNN3Q15417 329 aaKnown RBP11.8□□□□□ -0.52
SHKBP1-217ENST00000598558 MED22Q15528 200 aa11.8□□□□□ -0.52
SHKBP1-217ENST00000598558 ESCO2Q56NI9 601 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms