RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 DUX4L6P0CJ89 424 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 DUX4L7P0CJ90 424 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 MPZP25189 248 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 CDK5R1Q15078 307 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 CNN3Q15417 329 aaKnown RBP12.11□□□□□ -0.47
VRK3-206ENST00000594090 DUX4L9Q6RFH8 374 aaPredicted RBP12.11□□□□□ -0.47
VRK3-206ENST00000594090 IZUMO2Q6UXV1 221 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 AHSA2Q719I0 299 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 UTS2BQ765I0 119 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 SLC36A1Q7Z2H8 476 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 CALHM1Q8IU99 346 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 TEX29Q8N6K0 151 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 POC1AQ8NBT0 407 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 BPIFB6Q8NFQ5 453 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 OR5T2Q8NGG2 359 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 OR52N1Q8NH53 320 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 RPS4Y2Q8TD47 263 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 RAB40AQ8WXH6 277 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 CCL13Q99616 98 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 PKIBQ9C010 78 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 FKBP14Q9NWM8 211 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 CHCHD3Q9NX63 227 aaKnown RBP12.11□□□□□ -0.47
VRK3-206ENST00000594090 NLKQ9UBE8 527 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 DUX4Q9UBX2 424 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 IGKV1-27A0A075B6S5 117 aa12.1□□□□□ -0.47
VRK3-206ENST00000594090 IGKV1-9A0A0C4DH69 117 aa12.1□□□□□ -0.47
VRK3-206ENST00000594090 DVL1O14640 695 aa12.1□□□□□ -0.47
VRK3-206ENST00000594090 PGA5P0DJD9 388 aa12.1□□□□□ -0.47
VRK3-206ENST00000594090 ADRA2CP18825 462 aa12.1□□□□□ -0.47
VRK3-206ENST00000594090 AMY2BP19961 511 aa12.1□□□□□ -0.47
VRK3-206ENST00000594090 FUT6P51993 359 aa12.1□□□□□ -0.47
VRK3-206ENST00000594090 CCDC58Q4VC31 144 aa12.1□□□□□ -0.47
VRK3-206ENST00000594090 RPL22L1Q6P5R6 122 aaKnown RBP12.1□□□□□ -0.47
VRK3-206ENST00000594090 BTNL3Q6UXE8 466 aa12.1□□□□□ -0.47
VRK3-206ENST00000594090 C1QL2Q7Z5L3 287 aa12.1□□□□□ -0.47
VRK3-206ENST00000594090 ANGPTL5Q86XS5 388 aa12.1□□□□□ -0.47
VRK3-206ENST00000594090 FAM216BQ8N7L0 139 aa12.1□□□□□ -0.47
VRK3-206ENST00000594090 ANGPTL6Q8NI99 470 aa12.1□□□□□ -0.47
VRK3-206ENST00000594090 GATAD2BQ8WXI9 593 aa12.1□□□□□ -0.47
VRK3-206ENST00000594090 TMIGD2Q96BF3 282 aa12.1□□□□□ -0.47
VRK3-206ENST00000594090 BORCS8Q96FH0 119 aa12.1□□□□□ -0.47
VRK3-206ENST00000594090 ZNF488Q96MN9 340 aa12.1□□□□□ -0.47
VRK3-206ENST00000594090 MRI1Q9BV20 369 aa12.1□□□□□ -0.47
VRK3-206ENST00000594090 DNTTIP1Q9H147 329 aa12.1□□□□□ -0.47
VRK3-206ENST00000594090 NKX6-3A6NJ46 265 aa12.09□□□□□ -0.47
VRK3-206ENST00000594090 OR2AT4A6NND4 320 aa12.09□□□□□ -0.47
VRK3-206ENST00000594090 SLC1A7O00341 560 aa12.09□□□□□ -0.47
VRK3-206ENST00000594090 ENSAO43768 121 aaKnown RBP12.09□□□□□ -0.47
VRK3-206ENST00000594090 NOS1APO75052 506 aaPredicted RBP12.09□□□□□ -0.47
VRK3-206ENST00000594090 TFF1P04155 84 aa12.09□□□□□ -0.47
VRK3-206ENST00000594090 ATF1P18846 271 aa12.09□□□□□ -0.47
VRK3-206ENST00000594090 MYF6P23409 242 aa12.09□□□□□ -0.47
VRK3-206ENST00000594090 AZGP1P25311 298 aaKnown RBP12.09□□□□□ -0.47
VRK3-206ENST00000594090 HSPA13P48723 471 aa12.09□□□□□ -0.47
VRK3-206ENST00000594090 PAX8Q06710 450 aa12.09□□□□□ -0.47
VRK3-206ENST00000594090 IL24Q13007 206 aa12.09□□□□□ -0.47
VRK3-206ENST00000594090 C6orf141Q5SZD1 244 aa12.09□□□□□ -0.47
VRK3-206ENST00000594090 ATPAF1Q5TC12 328 aaPredicted RBP12.09□□□□□ -0.47
VRK3-206ENST00000594090 STX19Q8N4C7 294 aa12.09□□□□□ -0.47
VRK3-206ENST00000594090 ZNF485Q8NCK3 441 aa12.09□□□□□ -0.47
VRK3-206ENST00000594090 DNAAF1Q8NEP3 725 aa12.09□□□□□ -0.47
VRK3-206ENST00000594090 TSEN15Q8WW01 171 aaKnown RBP12.09□□□□□ -0.47
VRK3-206ENST00000594090 RGP1Q92546 391 aaPredicted RBP12.09□□□□□ -0.47
VRK3-206ENST00000594090 NRIP2Q9BQI9 281 aa12.09□□□□□ -0.47
VRK3-206ENST00000594090 NUDT16L1Q9BRJ7 211 aaKnown RBP12.09□□□□□ -0.47
VRK3-206ENST00000594090 ANKRD60Q9BZ19 345 aa12.09□□□□□ -0.47
VRK3-206ENST00000594090 RASSF4Q9H2L5 321 aa12.09□□□□□ -0.47
VRK3-206ENST00000594090 BABAM2Q9NXR7 383 aa12.09□□□□□ -0.47
VRK3-206ENST00000594090 RASL12Q9NYN1 266 aa12.09□□□□□ -0.47
VRK3-206ENST00000594090 AUP1Q9Y679 476 aa12.09□□□□□ -0.47
VRK3-206ENST00000594090 SIRT4Q9Y6E7 314 aaPredicted RBP12.09□□□□□ -0.47
VRK3-206ENST00000594090 IGKV1D-17A0A075B6S4 117 aa12.08□□□□□ -0.48
VRK3-206ENST00000594090 OGG1O15527 345 aa12.08□□□□□ -0.48
VRK3-206ENST00000594090 NXPH2O95156 264 aa12.08□□□□□ -0.48
VRK3-206ENST00000594090 LALBAP00709 142 aa12.08□□□□□ -0.48
VRK3-206ENST00000594090 FSHBP01225 129 aa12.08□□□□□ -0.48
VRK3-206ENST00000594090 PSG2P11465 335 aa12.08□□□□□ -0.48
VRK3-206ENST00000594090 SELLP14151 372 aa12.08□□□□□ -0.48
VRK3-206ENST00000594090 PRKACBP22694 351 aa12.08□□□□□ -0.48
VRK3-206ENST00000594090 C21orf33P30042 268 aaPredicted RBP12.08□□□□□ -0.48
VRK3-206ENST00000594090 RBP2P50120 134 aa12.08□□□□□ -0.48
VRK3-206ENST00000594090 SMIM21Q3B7S5 101 aa12.08□□□□□ -0.48
VRK3-206ENST00000594090 CD276Q5ZPR3 534 aa12.08□□□□□ -0.48
VRK3-206ENST00000594090 ACP7Q6ZNF0 438 aa12.08□□□□□ -0.48
VRK3-206ENST00000594090 ZNF788Q6ZQV5 615 aa12.08□□□□□ -0.48
VRK3-206ENST00000594090 LHFPL2Q6ZUX7 228 aa12.08□□□□□ -0.48
VRK3-206ENST00000594090 FGFRL1Q8N441 504 aa12.08□□□□□ -0.48
VRK3-206ENST00000594090 OR13C9Q8NGT0 318 aa12.08□□□□□ -0.48
VRK3-206ENST00000594090 NANPQ8TBE9 248 aa12.08□□□□□ -0.48
VRK3-206ENST00000594090 ST8SIA4Q92187 359 aa12.08□□□□□ -0.48
VRK3-206ENST00000594090 SPSB1Q96BD6 273 aa12.08□□□□□ -0.48
VRK3-206ENST00000594090 SMIM19Q96E16 107 aa12.08□□□□□ -0.48
VRK3-206ENST00000594090 GAFA1Q96PS6 74 aa12.08□□□□□ -0.48
VRK3-206ENST00000594090 HES4Q9HCC6 221 aa12.08□□□□□ -0.48
VRK3-206ENST00000594090 DHDHQ9UQ10 334 aa12.08□□□□□ -0.48
VRK3-206ENST00000594090 DOCK11Q5JSL3 2073 aa12.08□□□□□ -0.48
VRK3-206ENST00000594090 KIR2DS1A0A191URI9 304 aa12.07□□□□□ -0.48
VRK3-206ENST00000594090 MYL12BO14950 172 aa12.07□□□□□ -0.48
VRK3-206ENST00000594090 NDUFB3O43676 98 aa12.07□□□□□ -0.48
VRK3-206ENST00000594090 PLATP00750 562 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms