RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 GTF2A1LQ9UNN4 478 aa8.68□□□□□ -1.02
LIG3-212ENST00000590181 IGHV1-69DA0A0B4J2H0 117 aa8.67□□□□□ -1.02
LIG3-212ENST00000590181 A0A1B0GTI1 187 aa8.67□□□□□ -1.02
LIG3-212ENST00000590181 DAPL1A0PJW8 107 aa8.67□□□□□ -1.02
LIG3-212ENST00000590181 PQLC2LA1A4F0 135 aa8.67□□□□□ -1.02
LIG3-212ENST00000590181 IRGMA1A4Y4 181 aa8.67□□□□□ -1.02
LIG3-212ENST00000590181 ANKRD61A6NGH8 418 aa8.67□□□□□ -1.02
LIG3-212ENST00000590181 SAC3D1A6NKF1 404 aa8.67□□□□□ -1.02
LIG3-212ENST00000590181 C22orf46C9J442 243 aa8.67□□□□□ -1.02
LIG3-212ENST00000590181 H3BNX3 289 aa8.67□□□□□ -1.02
LIG3-212ENST00000590181 SLC16A6O15403 523 aa8.67□□□□□ -1.02
LIG3-212ENST00000590181 ALX3O95076 343 aa8.67□□□□□ -1.02
LIG3-212ENST00000590181 CYB5AP00167 134 aa8.67□□□□□ -1.02
LIG3-212ENST00000590181 IGHV1-69P01742 117 aa8.67□□□□□ -1.02
LIG3-212ENST00000590181 FAHP16930 419 aa8.67□□□□□ -1.02
LIG3-212ENST00000590181 PRKACBP22694 351 aa8.67□□□□□ -1.02
LIG3-212ENST00000590181 CSNK2BP67870 215 aa8.67□□□□□ -1.02
LIG3-212ENST00000590181 CNN3Q15417 329 aaKnown RBP8.67□□□□□ -1.02
LIG3-212ENST00000590181 LPCAT4Q643R3 524 aa8.67□□□□□ -1.02
LIG3-212ENST00000590181 FIP1L1Q6UN15 594 aaKnown RBP8.67□□□□□ -1.02
LIG3-212ENST00000590181 Q6YL49 198 aa8.67□□□□□ -1.02
LIG3-212ENST00000590181 UTS2BQ765I0 119 aa8.67□□□□□ -1.02
LIG3-212ENST00000590181 SYS1Q8N2H4 156 aa8.67□□□□□ -1.02
LIG3-212ENST00000590181 OR14K1Q8NGZ2 314 aa8.67□□□□□ -1.02
LIG3-212ENST00000590181 RORBQ92753 470 aa8.67□□□□□ -1.02
LIG3-212ENST00000590181 STMN2Q93045 179 aa8.67□□□□□ -1.02
LIG3-212ENST00000590181 CCL13Q99616 98 aa8.67□□□□□ -1.02
LIG3-212ENST00000590181 CHST5Q9GZS9 411 aa8.67□□□□□ -1.02
LIG3-212ENST00000590181 S100A14Q9HCY8 104 aa8.67□□□□□ -1.02
LIG3-212ENST00000590181 MRPS18AQ9NVS2 196 aaKnown RBP8.67□□□□□ -1.02
LIG3-212ENST00000590181 EXOGQ9Y2C4 368 aaKnown RBP8.67□□□□□ -1.02
LIG3-212ENST00000590181 RPL36Q9Y3U8 105 aaKnown RBP8.67□□□□□ -1.02
LIG3-212ENST00000590181 GMPPBQ9Y5P6 360 aa8.67□□□□□ -1.02
LIG3-212ENST00000590181 MMP24Q9Y5R2 645 aa8.67□□□□□ -1.02
LIG3-212ENST00000590181 TRAV40A0A0B4J280 105 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 CENPVL3A0A0U1RRI6 287 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 DNAJC9-AS1A6NH13 148 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 J3QRE1 110 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 PSMD9O00233 223 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 EI24O14681 340 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 AKR7A2O43488 359 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 KNG1P01042 644 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 CRYBA1P05813 215 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 PGA5P0DJD9 388 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 IGHV4-38-2P0DP08 117 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 HAAOP46952 286 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 RBP2P50120 134 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 UBE2E1P51965 193 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 SLC9A3R2Q15599 337 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 HAGHLQ6PII5 290 aaPredicted RBP8.66□□□□□ -1.02
LIG3-212ENST00000590181 ACP7Q6ZNF0 438 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 BCDIN3DQ7Z5W3 292 aaKnown RBP8.66□□□□□ -1.02
LIG3-212ENST00000590181 MKXQ8IYA7 352 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 PQLC1Q8N2U9 271 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 CBR4Q8N4T8 237 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 PACRGLQ8N7B6 248 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 ZNF555Q8NEP9 628 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 RHOXF1Q8NHV9 184 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 SPSB1Q96BD6 273 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 CPNE2Q96FN4 548 aaPredicted RBP8.66□□□□□ -1.02
LIG3-212ENST00000590181 NRIP2Q9BQI9 281 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 PCGF1Q9BSM1 259 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 HEXA-AS1Q9H8Q6 139 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 HES4Q9HCC6 221 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 GLS2Q9UI32 602 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 FAM96BQ9Y3D0 163 aa8.66□□□□□ -1.02
LIG3-212ENST00000590181 LOC100130705A0A1B0GUX0 176 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 BTBD17A6NE02 478 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 ENTPD6O75354 484 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 RPP14O95059 124 aaKnown RBP8.65□□□□□ -1.02
LIG3-212ENST00000590181 NXPH2O95156 264 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 RBP4P02753 201 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 MT-ND2P03891 347 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 CHRM2P08172 466 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 FBP1P09467 338 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 PSG2P11465 335 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 PRDX2P32119 198 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 POLR2IP36954 125 aaKnown RBP8.65□□□□□ -1.02
LIG3-212ENST00000590181 BMXP51813 675 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 ATP1B3P54709 279 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 ERVK11-1P61568 191 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 ARF6P62330 175 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 MFGE8Q08431 387 aaPredicted RBP8.65□□□□□ -1.02
LIG3-212ENST00000590181 MED21Q13503 144 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 GALEQ14376 348 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 AANATQ16613 207 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 ZSCAN26Q16670 478 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 CCDC58Q4VC31 144 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 CEP78Q5JTW2 689 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 TTC23Q5W5X9 447 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 LDLRAD3Q86YD5 345 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 C19orf18Q8NEA5 215 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 OR2G2Q8NGZ5 317 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 C22orf15Q8WYQ4 148 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 DYRK2Q92630 601 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 RNFT2Q96EX2 444 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 BORCS8Q96FH0 119 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 GAFA1Q96PS6 74 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 TBX15Q96SF7 602 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 JAM3Q9BX67 310 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms