RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	CMTM7	Q96FZ5	175 aa		3.89	□□□□□ -1.79
SS18-223	ENST00000583595	FCRL1	Q96LA6	429 aa		3.89	□□□□□ -1.79
SS18-223	ENST00000583595	TSNAX	Q99598	290 aa	Known RBP	3.89	□□□□□ -1.79
SS18-223	ENST00000583595	MRPL45	Q9BRJ2	306 aa	Known RBP	3.89	□□□□□ -1.79
SS18-223	ENST00000583595	GGACT	Q9BVM4	153 aa		3.89	□□□□□ -1.79
SS18-223	ENST00000583595	C1QTNF6	Q9BXI9	259 aa		3.89	□□□□□ -1.79
SS18-223	ENST00000583595	TOLLIP	Q9H0E2	274 aa		3.89	□□□□□ -1.79
SS18-223	ENST00000583595	OR51E2	Q9H255	320 aa		3.89	□□□□□ -1.79
SS18-223	ENST00000583595	OR51J1	Q9H342	316 aa		3.89	□□□□□ -1.79
SS18-223	ENST00000583595	GAL3ST2	Q9H3Q3	398 aa		3.89	□□□□□ -1.79
SS18-223	ENST00000583595	EML4	Q9HC35	981 aa	Known RBP	3.89	□□□□□ -1.79
SS18-223	ENST00000583595	FGF22	Q9HCT0	170 aa		3.89	□□□□□ -1.79
SS18-223	ENST00000583595	CTPS2	Q9NRF8	586 aa		3.89	□□□□□ -1.79
SS18-223	ENST00000583595	CCDC167	Q9P0B6	97 aa		3.89	□□□□□ -1.79
SS18-223	ENST00000583595	CLN8	Q9UBY8	286 aa		3.89	□□□□□ -1.79
SS18-223	ENST00000583595	BTRC	Q9Y297	605 aa		3.89	□□□□□ -1.79
SS18-223	ENST00000583595	GOLT1B	Q9Y3E0	138 aa		3.89	□□□□□ -1.79
SS18-223	ENST00000583595	MMACHC	Q9Y4U1	282 aa		3.89	□□□□□ -1.79
SS18-223	ENST00000583595	QSER1	Q2KHR3	1735 aa		3.89	□□□□□ -1.79
SS18-223	ENST00000583595	SHANK3	Q9BYB0	1731 aa		3.89	□□□□□ -1.79
SS18-223	ENST00000583595	TAF1L	Q8IZX4	1826 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	SCN7A	Q01118	1682 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	LY75	O60449	1722 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	TRAV19	A0A0A6YYK7	116 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595		A0A1B0GWB2	263 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	FOXI3	A8MTJ6	420 aa	Predicted RBP	3.88	□□□□□ -1.79
SS18-223	ENST00000583595	MKRN2OS	H3BPM6	223 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	APOC4-APOC2	K7ER74	178 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595		K7ERQ8	282 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	SAP18	O00422	153 aa	Known RBP	3.88	□□□□□ -1.79
SS18-223	ENST00000583595	GNGT2	O14610	69 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	GOSR2	O14653	212 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	MBTPS2	O43462	519 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	CHST1	O43916	411 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	DPM1	O60762	260 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	RP2	O75695	350 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	CD160	O95971	181 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	IGHV2-5	P01817	119 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	APOC2	P02655	101 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	S100A11	P31949	105 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	SDC2	P34741	201 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	MAGEA3	P43357	314 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	GPR4	P46093	362 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	MRPL19	P49406	292 aa	Known RBP	3.88	□□□□□ -1.79
SS18-223	ENST00000583595	DNAJB13	P59910	316 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	KRTAP10-6	P60371	365 aa	Predicted RBP	3.88	□□□□□ -1.79
SS18-223	ENST00000583595	UBE2M	P61081	183 aa	Known RBP	3.88	□□□□□ -1.79
SS18-223	ENST00000583595	SNRPF	P62306	86 aa	Known RBP	3.88	□□□□□ -1.79
SS18-223	ENST00000583595	PPP3R1	P63098	170 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	SLC7A9	P82251	487 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	TNFRSF9	Q07011	255 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	FABP9	Q0Z7S8	132 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	ELAVL2	Q12926	359 aa	Known RBP	3.88	□□□□□ -1.79
SS18-223	ENST00000583595	PIGH	Q14442	188 aa	Predicted RBP	3.88	□□□□□ -1.79
SS18-223	ENST00000583595	PEA15	Q15121	130 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	C10orf91	Q5T1B1	145 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	C9orf66	Q5T8R8	295 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	SPNS3	Q6ZMD2	512 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	APOBEC3F	Q8IUX4	373 aa	Known RBP	3.88	□□□□□ -1.79
SS18-223	ENST00000583595	FUNDC1	Q8IVP5	155 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	GID4	Q8IVV7	300 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	FTMT	Q8N4E7	242 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	CLDN22	Q8N7P3	220 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	C8orf31	Q8N9H6	132 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	OR11H7	Q8NGC8	314 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	OR52E4	Q8NGH9	312 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	OR1S1	Q8NH92	325 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	S100PBP	Q96BU1	408 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	DIRAS2	Q96HU8	199 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	NOL4L	Q96MY1	436 aa	Predicted RBP	3.88	□□□□□ -1.79
SS18-223	ENST00000583595	PGLYRP2	Q96PD5	576 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	PKMYT1	Q99640	499 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	PITX2	Q99697	317 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	SOST	Q9BQB4	213 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	TMEM59	Q9BXS4	323 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	BARHL1	Q9BZE3	327 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	SLC38A1	Q9H2H9	487 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	CACYBP	Q9HB71	228 aa	Known RBP	3.88	□□□□□ -1.79
SS18-223	ENST00000583595	TREM1	Q9NP99	234 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	GPATCH2L	Q9NWQ4	482 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	OR12D3	Q9UGF7	316 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	NDRG2	Q9UN36	371 aa	Known RBP	3.88	□□□□□ -1.79
SS18-223	ENST00000583595	SLC22A14	Q9Y267	594 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	CARHSP1	Q9Y2V2	147 aa	Known RBP	3.88	□□□□□ -1.79
SS18-223	ENST00000583595	PPIL1	Q9Y3C6	166 aa		3.88	□□□□□ -1.79
SS18-223	ENST00000583595	AKAP11	Q9UKA4	1901 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	RBBP6	Q7Z6E9	1792 aa	Known RBP	3.87	□□□□□ -1.79
SS18-223	ENST00000583595	IGKV1D-8	A0A087WSZ0	117 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	TMEM218	A2RU14	115 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	ERI2	A8K979	691 aa	Known RBP	3.87	□□□□□ -1.79
SS18-223	ENST00000583595	C5orf58	C9J3I9	102 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	ZNF670-ZNF695	F2Z2N8	137 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	FXYD1	O00168	92 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	SIRPB1	O00241	398 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	NR5A2	O00482	541 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	DLEU1	O43261	78 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	SLC37A4	O43826	429 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	FCN3	O75636	299 aa		3.87	□□□□□ -1.79
SS18-223	ENST00000583595	GATB	O75879	557 aa	Known RBP	3.87	□□□□□ -1.79
SS18-223	ENST00000583595	RPP14	O95059	124 aa	Known RBP	3.87	□□□□□ -1.79

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