RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 C1QL2Q7Z5L3 287 aa16.05■□□□□ 0.16
SS18-208ENST00000577751 POC1AQ8NBT0 407 aa16.05■□□□□ 0.16
SS18-208ENST00000577751 ZNF485Q8NCK3 441 aa16.05■□□□□ 0.16
SS18-208ENST00000577751 DNAAF1Q8NEP3 725 aa16.05■□□□□ 0.16
SS18-208ENST00000577751 OR5T2Q8NGG2 359 aa16.05■□□□□ 0.16
SS18-208ENST00000577751 OR5AK2Q8NH90 309 aa16.05■□□□□ 0.16
SS18-208ENST00000577751 ANGPTL6Q8NI99 470 aa16.05■□□□□ 0.16
SS18-208ENST00000577751 TRMT10AQ8TBZ6 339 aaKnown RBP16.05■□□□□ 0.16
SS18-208ENST00000577751 CCL13Q99616 98 aa16.05■□□□□ 0.16
SS18-208ENST00000577751 PKIBQ9C010 78 aa16.05■□□□□ 0.16
SS18-208ENST00000577751 RASSF4Q9H2L5 321 aa16.05■□□□□ 0.16
SS18-208ENST00000577751 FKBP14Q9NWM8 211 aa16.05■□□□□ 0.16
SS18-208ENST00000577751 RASL12Q9NYN1 266 aa16.05■□□□□ 0.16
SS18-208ENST00000577751 DNAJB11Q9UBS4 358 aa16.05■□□□□ 0.16
SS18-208ENST00000577751 MXRA5Q9NR99 2828 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 IGKV1-27A0A075B6S5 117 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 IGKV1-9A0A0C4DH69 117 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 TRBV2A0A0J9YWF9 115 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 A0A1B0GW55 424 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 FAM230AA0A1W2PPH8 454 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 C22orf46C9J442 243 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 DVL1O14640 695 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 DUX4L2P0CJ85 424 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 DUX4L3P0CJ86 424 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 DUX4L4P0CJ87 422 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 DUX4L5P0CJ88 424 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 DUX4L6P0CJ89 424 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 DUX4L7P0CJ90 424 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 PGA5P0DJD9 388 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 IL24Q13007 206 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 MED21Q13503 144 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 CNN3Q15417 329 aaKnown RBP16.04■□□□□ 0.16
SS18-208ENST00000577751 DUX4L9Q6RFH8 374 aaPredicted RBP16.04■□□□□ 0.16
SS18-208ENST00000577751 ZNF788Q6ZQV5 615 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 SLC36A1Q7Z2H8 476 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 ANGPTL5Q86XS5 388 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 BPIFB6Q8NFQ5 453 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 OR13C3Q8NGS6 347 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 OR52N1Q8NH53 320 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 TMIGD2Q96BF3 282 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 PDCD1LG2Q9BQ51 273 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 COMMD4Q9H0A8 199 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 VCX3BQ9H321 246 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 SNTG1Q9NSN8 517 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 BABAM2Q9NXR7 383 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 NLKQ9UBE8 527 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 DUX4Q9UBX2 424 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 METRNQ9UJH8 293 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 POLDIP2Q9Y2S7 368 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 AUP1Q9Y679 476 aa16.04■□□□□ 0.16
SS18-208ENST00000577751 OR2AT4A6NND4 320 aa16.03■□□□□ 0.16
SS18-208ENST00000577751 OGG1O15527 345 aa16.03■□□□□ 0.16
SS18-208ENST00000577751 ATP6V1G2O95670 118 aa16.03■□□□□ 0.16
SS18-208ENST00000577751 ADRA2CP18825 462 aa16.03■□□□□ 0.16
SS18-208ENST00000577751 ATF1P18846 271 aa16.03■□□□□ 0.16
SS18-208ENST00000577751 CDK5R1Q15078 307 aa16.03■□□□□ 0.16
SS18-208ENST00000577751 CD276Q5ZPR3 534 aa16.03■□□□□ 0.16
SS18-208ENST00000577751 BTNL3Q6UXE8 466 aa16.03■□□□□ 0.16
SS18-208ENST00000577751 ACP7Q6ZNF0 438 aa16.03■□□□□ 0.16
SS18-208ENST00000577751 NANPQ8TBE9 248 aa16.03■□□□□ 0.16
SS18-208ENST00000577751 NPRL2Q8WTW4 380 aa16.03■□□□□ 0.16
SS18-208ENST00000577751 NRIP2Q9BQI9 281 aa16.03■□□□□ 0.16
SS18-208ENST00000577751 NUDT16L1Q9BRJ7 211 aaKnown RBP16.03■□□□□ 0.16
SS18-208ENST00000577751 MRI1Q9BV20 369 aa16.03■□□□□ 0.16
SS18-208ENST00000577751 HES4Q9HCC6 221 aa16.03■□□□□ 0.16
SS18-208ENST00000577751 CHCHD3Q9NX63 227 aaKnown RBP16.03■□□□□ 0.16
SS18-208ENST00000577751 ZNF222Q9UK12 451 aa16.03■□□□□ 0.16
SS18-208ENST00000577751 IGKV1D-17A0A075B6S4 117 aa16.02■□□□□ 0.16
SS18-208ENST00000577751 LALBAP00709 142 aa16.02■□□□□ 0.16
SS18-208ENST00000577751 MT-ND2P03891 347 aa16.02■□□□□ 0.16
SS18-208ENST00000577751 PPIAL4GP0DN37 164 aa16.02■□□□□ 0.16
SS18-208ENST00000577751 PSG2P11465 335 aa16.02■□□□□ 0.16
SS18-208ENST00000577751 ZNF20P17024 532 aa16.02■□□□□ 0.16
SS18-208ENST00000577751 C21orf33P30042 268 aaPredicted RBP16.02■□□□□ 0.16
SS18-208ENST00000577751 ERVK11-1P61568 191 aa16.02■□□□□ 0.16
SS18-208ENST00000577751 C6orf141Q5SZD1 244 aa16.02■□□□□ 0.16
SS18-208ENST00000577751 PARP16Q8N5Y8 322 aa16.02■□□□□ 0.16
SS18-208ENST00000577751 FAM216BQ8N7L0 139 aa16.02■□□□□ 0.16
SS18-208ENST00000577751 GATAD2BQ8WXI9 593 aa16.02■□□□□ 0.16
SS18-208ENST00000577751 BORCS8Q96FH0 119 aa16.02■□□□□ 0.16
SS18-208ENST00000577751 ZNF488Q96MN9 340 aa16.02■□□□□ 0.16
SS18-208ENST00000577751 GAFA1Q96PS6 74 aa16.02■□□□□ 0.16
SS18-208ENST00000577751 ANKRD60Q9BZ19 345 aa16.02■□□□□ 0.16
SS18-208ENST00000577751 SIRT4Q9Y6E7 314 aaPredicted RBP16.02■□□□□ 0.16
SS18-208ENST00000577751 GPR37O15354 613 aa16.01■□□□□ 0.15
SS18-208ENST00000577751 ENSAO43768 121 aaKnown RBP16.01■□□□□ 0.15
SS18-208ENST00000577751 ALX3O95076 343 aa16.01■□□□□ 0.15
SS18-208ENST00000577751 ECDO95905 644 aaPredicted RBP16.01■□□□□ 0.15
SS18-208ENST00000577751 LIPFP07098 398 aa16.01■□□□□ 0.15
SS18-208ENST00000577751 PRKACBP22694 351 aa16.01■□□□□ 0.15
SS18-208ENST00000577751 MYF6P23409 242 aa16.01■□□□□ 0.15
SS18-208ENST00000577751 AZGP1P25311 298 aaKnown RBP16.01■□□□□ 0.15
SS18-208ENST00000577751 RBP2P50120 134 aa16.01■□□□□ 0.15
SS18-208ENST00000577751 AHSA2Q719I0 299 aa16.01■□□□□ 0.15
SS18-208ENST00000577751 FGFRL1Q8N441 504 aa16.01■□□□□ 0.15
SS18-208ENST00000577751 RGP1Q92546 391 aaPredicted RBP16.01■□□□□ 0.15
SS18-208ENST00000577751 SPSB1Q96BD6 273 aa16.01■□□□□ 0.15
SS18-208ENST00000577751 MED30Q96HR3 178 aa16.01■□□□□ 0.15
SS18-208ENST00000577751 SIGLEC5O15389 551 aa16■□□□□ 0.15
SS18-208ENST00000577751 NDUFB3O43676 98 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms