RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 FAM46AQ96IP4 442 aaKnown RBP12.41□□□□□ -0.42
VPS53-218ENST00000575207 SORT1Q99523 831 aa12.41□□□□□ -0.42
VPS53-218ENST00000575207 SDR39U1Q9NRG7 319 aaPredicted RBP12.41□□□□□ -0.42
VPS53-218ENST00000575207 OR6C68A6NDL8 312 aa12.4□□□□□ -0.42
VPS53-218ENST00000575207 TYROBPO43914 113 aa12.4□□□□□ -0.42
VPS53-218ENST00000575207 PRDX2P32119 198 aa12.4□□□□□ -0.42
VPS53-218ENST00000575207 PTCHD4Q6ZW05 846 aa12.4□□□□□ -0.42
VPS53-218ENST00000575207 HAPLN4Q86UW8 402 aa12.4□□□□□ -0.42
VPS53-218ENST00000575207 CATSPERDQ86XM0 798 aa12.4□□□□□ -0.42
VPS53-218ENST00000575207 PGAM4Q8N0Y7 254 aa12.4□□□□□ -0.42
VPS53-218ENST00000575207 FTMTQ8N4E7 242 aa12.4□□□□□ -0.42
VPS53-218ENST00000575207 EPS8L3Q8TE67 593 aaKnown RBP12.4□□□□□ -0.42
VPS53-218ENST00000575207 OR5P3Q8WZ94 311 aa12.4□□□□□ -0.42
VPS53-218ENST00000575207 TMEM106AQ96A25 262 aa12.4□□□□□ -0.42
VPS53-218ENST00000575207 TAMM41Q96BW9 452 aa12.4□□□□□ -0.42
VPS53-218ENST00000575207 LRGUKQ96M69 825 aa12.4□□□□□ -0.42
VPS53-218ENST00000575207 THAP7Q9BT49 309 aaPredicted RBP12.4□□□□□ -0.42
VPS53-218ENST00000575207 OR51J1Q9H342 316 aa12.4□□□□□ -0.42
VPS53-218ENST00000575207 PPCSQ9HAB8 311 aa12.4□□□□□ -0.42
VPS53-218ENST00000575207 KRCC1Q9NPI7 259 aaPredicted RBP12.4□□□□□ -0.42
VPS53-218ENST00000575207 SIGLEC8Q9NYZ4 499 aa12.4□□□□□ -0.42
VPS53-218ENST00000575207 VAPAQ9P0L0 249 aa12.4□□□□□ -0.42
VPS53-218ENST00000575207 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.4□□□□□ -0.42
VPS53-218ENST00000575207 SH3GLB1Q9Y371 365 aa12.4□□□□□ -0.42
VPS53-218ENST00000575207 MPC1Q9Y5U8 109 aa12.4□□□□□ -0.42
VPS53-218ENST00000575207 EVPLLA8MZ36 301 aa12.39□□□□□ -0.43
VPS53-218ENST00000575207 SOCS2O14508 198 aa12.39□□□□□ -0.43
VPS53-218ENST00000575207 IGLV1-47P01700 117 aa12.39□□□□□ -0.43
VPS53-218ENST00000575207 MNDAP41218 407 aa12.39□□□□□ -0.43
VPS53-218ENST00000575207 TIGD6Q17RP2 521 aa12.39□□□□□ -0.43
VPS53-218ENST00000575207 SMIM21Q3B7S5 101 aa12.39□□□□□ -0.43
VPS53-218ENST00000575207 TCF23Q7RTU1 214 aa12.39□□□□□ -0.43
VPS53-218ENST00000575207 PATL1Q86TB9 770 aaKnown RBP12.39□□□□□ -0.43
VPS53-218ENST00000575207 NRMQ8IXM6 262 aa12.39□□□□□ -0.43
VPS53-218ENST00000575207 CSNK2A3Q8NEV1 391 aa12.39□□□□□ -0.43
VPS53-218ENST00000575207 ZNF596Q8TC21 504 aa12.39□□□□□ -0.43
VPS53-218ENST00000575207 RNF170Q96K19 258 aa12.39□□□□□ -0.43
VPS53-218ENST00000575207 NDEL1Q9GZM8 345 aa12.39□□□□□ -0.43
VPS53-218ENST00000575207 FGF23Q9GZV9 251 aaPredicted RBP12.39□□□□□ -0.43
VPS53-218ENST00000575207 ABCB9Q9NP78 766 aa12.39□□□□□ -0.43
VPS53-218ENST00000575207 RASL12Q9NYN1 266 aa12.39□□□□□ -0.43
VPS53-218ENST00000575207 HAO1Q9UJM8 370 aa12.39□□□□□ -0.43
VPS53-218ENST00000575207 VSIG4Q9Y279 399 aa12.39□□□□□ -0.43
VPS53-218ENST00000575207 MYCBP2O75592 4640 aa12.39□□□□□ -0.43
VPS53-218ENST00000575207 hCG_38984A0A1B0GV85 526 aa12.38□□□□□ -0.43
VPS53-218ENST00000575207 TBX1O43435 398 aa12.38□□□□□ -0.43
VPS53-218ENST00000575207 NOS3P29474 1203 aa12.38□□□□□ -0.43
VPS53-218ENST00000575207 CEACAM3P40198 252 aa12.38□□□□□ -0.43
VPS53-218ENST00000575207 GSK3AP49840 483 aa12.38□□□□□ -0.43
VPS53-218ENST00000575207 PRKXP51817 358 aa12.38□□□□□ -0.43
VPS53-218ENST00000575207 SLURP1P55000 103 aa12.38□□□□□ -0.43
VPS53-218ENST00000575207 EWSR1Q01844 656 aaKnown RBP eCLIP12.38□□□□□ -0.43
VPS53-218ENST00000575207 CKAP4Q07065 602 aaKnown RBP12.38□□□□□ -0.43
VPS53-218ENST00000575207 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.38□□□□□ -0.43
VPS53-218ENST00000575207 PRDX4Q13162 271 aa12.38□□□□□ -0.43
VPS53-218ENST00000575207 SNCBQ16143 134 aa12.38□□□□□ -0.43
VPS53-218ENST00000575207 TPTE2P1Q5T6R2 138 aa12.38□□□□□ -0.43
VPS53-218ENST00000575207 CCDC144NLQ6NUI1 221 aa12.38□□□□□ -0.43
VPS53-218ENST00000575207 ZNF491Q8N8L2 437 aa12.38□□□□□ -0.43
VPS53-218ENST00000575207 RASSF5Q8WWW0 418 aa12.38□□□□□ -0.43
VPS53-218ENST00000575207 REEP6Q96HR9 211 aa12.38□□□□□ -0.43
VPS53-218ENST00000575207 PKNOX2Q96KN3 472 aa12.38□□□□□ -0.43
VPS53-218ENST00000575207 OR8B4Q96RC9 309 aa12.38□□□□□ -0.43
VPS53-218ENST00000575207 NRIP2Q9BQI9 281 aa12.38□□□□□ -0.43
VPS53-218ENST00000575207 TXLNGYQ9BZA5 131 aa12.38□□□□□ -0.43
VPS53-218ENST00000575207 PNPOQ9NVS9 261 aa12.38□□□□□ -0.43
VPS53-218ENST00000575207 DNAH5Q8TE73 4624 aa12.38□□□□□ -0.43
VPS53-218ENST00000575207 ZNF850A8MQ14 1090 aa12.37□□□□□ -0.43
VPS53-218ENST00000575207 OOSP1A8MZH6 123 aa12.37□□□□□ -0.43
VPS53-218ENST00000575207 TROVE2P10155 538 aaKnown RBP eCLIP12.37□□□□□ -0.43
VPS53-218ENST00000575207 TNFRSF1BP20333 461 aa12.37□□□□□ -0.43
VPS53-218ENST00000575207 CDKN2AP42771 156 aaKnown RBP12.37□□□□□ -0.43
VPS53-218ENST00000575207 SLC1A6P48664 564 aa12.37□□□□□ -0.43
VPS53-218ENST00000575207 EDDM3BP56851 147 aa12.37□□□□□ -0.43
VPS53-218ENST00000575207 ZBED5Q49AG3 693 aa12.37□□□□□ -0.43
VPS53-218ENST00000575207 ABHD12Q8N2K0 398 aa12.37□□□□□ -0.43
VPS53-218ENST00000575207 OR4C15Q8NGM1 316 aa12.37□□□□□ -0.43
VPS53-218ENST00000575207 ZNF671Q8TAW3 534 aa12.37□□□□□ -0.43
VPS53-218ENST00000575207 RNF166Q96A37 237 aaPredicted RBP12.37□□□□□ -0.43
VPS53-218ENST00000575207 COPS4Q9BT78 406 aa12.37□□□□□ -0.43
VPS53-218ENST00000575207 NSRP1Q9H0G5 558 aaKnown RBP12.37□□□□□ -0.43
VPS53-218ENST00000575207 SRA1Q9HD15 236 aaKnown RBP12.37□□□□□ -0.43
VPS53-218ENST00000575207 NRIP3Q9NQ35 241 aa12.37□□□□□ -0.43
VPS53-218ENST00000575207 STUB1Q9UNE7 303 aa12.37□□□□□ -0.43
VPS53-218ENST00000575207 B9D1Q9UPM9 204 aa12.37□□□□□ -0.43
VPS53-218ENST00000575207 TRBV5-3A0A0A0MS03 114 aa12.36□□□□□ -0.43
VPS53-218ENST00000575207 ARRDC5A6NEK1 342 aa12.36□□□□□ -0.43
VPS53-218ENST00000575207 LY6LH3BQJ8 138 aa12.36□□□□□ -0.43
VPS53-218ENST00000575207 K7N7A8 449 aa12.36□□□□□ -0.43
VPS53-218ENST00000575207 PSMD9O00233 223 aa12.36□□□□□ -0.43
VPS53-218ENST00000575207 SPARCP09486 303 aa12.36□□□□□ -0.43
VPS53-218ENST00000575207 RHCEP18577 417 aa12.36□□□□□ -0.43
VPS53-218ENST00000575207 OR1E2P47887 323 aa12.36□□□□□ -0.43
VPS53-218ENST00000575207 PITPNAQ00169 270 aa12.36□□□□□ -0.43
VPS53-218ENST00000575207 PRKCDQ05655 676 aa12.36□□□□□ -0.43
VPS53-218ENST00000575207 CYP51A1Q16850 503 aa12.36□□□□□ -0.43
VPS53-218ENST00000575207 KLHL12Q53G59 568 aa12.36□□□□□ -0.43
VPS53-218ENST00000575207 FAM53AQ6NSI3 398 aaPredicted RBP12.36□□□□□ -0.43
VPS53-218ENST00000575207 RTN4RL2Q86UN3 420 aa12.36□□□□□ -0.43
VPS53-218ENST00000575207 HPSE2Q8WWQ2 592 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms