RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 SLC35A3Q9Y2D2 325 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 MMP24Q9Y5R2 645 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 CDH10Q9Y6N8 788 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 AKAP6Q13023 2319 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 A0A0G2JND7 137 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 A0A1B0GTI1 187 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 FAM74A7A6NL05 159 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 A8MVM7 634 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 C5orf58C9J3I9 102 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 G3V4G9 280 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 NDUFAB1O14561 156 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 KIAA0513O60268 411 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 EDF1O60869 148 aaKnown RBP5.13□□□□□ -1.59
VPS53-212ENST00000572259 TOXO94900 526 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 CLDN1O95832 211 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 HLA-HP01893 362 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 CRHP06850 196 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 ADORA3P0DMS8 318 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 ZNF708P17019 499 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 EPHA2P29317 976 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 IL12AP29459 219 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 CEACAM8P31997 349 aaPredicted RBP5.13□□□□□ -1.59
VPS53-212ENST00000572259 TGM4P49221 684 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 LHX2P50458 406 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 CRISP3P54108 245 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 TMEM50BP56557 158 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 SEC61A1P61619 476 aaKnown RBP5.13□□□□□ -1.59
VPS53-212ENST00000572259 SELENBP1Q13228 472 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 ZNF141Q15928 474 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 LRRC37A5PQ49AS3 106 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 FAM74A3Q4VXF1 159 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 ACSM5Q6NUN0 579 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 APOOLQ6UXV4 268 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 C5orf24Q7Z6I8 188 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 CCDC71Q8IV32 467 aaPredicted RBP5.13□□□□□ -1.59
VPS53-212ENST00000572259 ZNF440Q8IYI8 595 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 NRACQ8N912 160 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 OR52I1Q8NGK6 324 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 OR52N5Q8NH56 324 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 OR5W2Q8NH69 310 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 GPR148Q8TDV2 347 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 TMEM255BQ8WV15 326 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 ACOT11Q8WXI4 607 aaPredicted RBP5.13□□□□□ -1.59
VPS53-212ENST00000572259 MED30Q96HR3 178 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 TXNDC15Q96J42 360 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 TEX37Q96LM6 180 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 TRAF4Q9BUZ4 470 aaPredicted RBP5.13□□□□□ -1.59
VPS53-212ENST00000572259 PARD6GQ9BYG4 376 aaPredicted RBP5.13□□□□□ -1.59
VPS53-212ENST00000572259 LAT2Q9GZY6 243 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 COMMD4Q9H0A8 199 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 C1orf198Q9H425 327 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 HEATR1Q9H583 2144 aaKnown RBP5.13□□□□□ -1.59
VPS53-212ENST00000572259 TPT1P8Q9HAU6 139 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 ZFP57Q9NU63 452 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 CCDC167Q9P0B6 97 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 PURGQ9UJV8 347 aaKnown RBP5.13□□□□□ -1.59
VPS53-212ENST00000572259 ZNF221Q9UK13 617 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 MCTS1Q9ULC4 181 aaKnown RBP5.13□□□□□ -1.59
VPS53-212ENST00000572259 VDAC3Q9Y277 283 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 ZNF337Q9Y3M9 751 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 SAMHD1Q9Y3Z3 626 aaKnown RBP5.13□□□□□ -1.59
VPS53-212ENST00000572259 FAM215AQ9Y5M1 114 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 ADGRG4Q8IZF6 3080 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 ITPR2Q14571 2701 aa5.13□□□□□ -1.59
VPS53-212ENST00000572259 FREM1Q5H8C1 2179 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 CELSR2Q9HCU4 2923 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 A0A096LPI6 279 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 A0A1W2PP18 115 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 PRSS37A4D1T9 235 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 SLC22A20A6NK97 555 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 HMGN4O00479 90 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 AIM2O14862 343 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 ENTPD5O75356 428 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 RCBTB2O95199 551 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 BRI3O95415 125 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 DBIP07108 87 aaKnown RBP5.12□□□□□ -1.59
VPS53-212ENST00000572259 FGF2P09038 288 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 RNF224P0DH78 156 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 PSKH1P11801 424 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 NR2C1P13056 603 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 ELK4P28324 431 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 SSTR2P30874 369 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 AQP2P41181 271 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 MAGEA2P43356 314 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 CBX5P45973 191 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 CX3CR1P49238 355 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 RASSF2P50749 326 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 RAB14P61106 215 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 COPZ1P61923 177 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 PLPPR5Q32ZL2 321 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 COQ5Q5HYK3 327 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 SAMD4BQ5PRF9 694 aaKnown RBP5.12□□□□□ -1.59
VPS53-212ENST00000572259 LY6G6FQ5SQ64 297 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 C11orf87Q6NUJ2 197 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 REEP3Q6NUK4 255 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 STEAP1BQ6NZ63 245 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 TTC33Q6PID6 262 aaPredicted RBP5.12□□□□□ -1.59
VPS53-212ENST00000572259 CLIP4Q8N3C7 705 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 ZNF563Q8TA94 476 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 LGALS14Q8TCE9 139 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms