RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 FSTP19883 344 aa17.29■□□□□ 0.36
VPS53-210ENST00000571456 PCMT1P22061 227 aa17.29■□□□□ 0.36
VPS53-210ENST00000571456 MPZP25189 248 aa17.29■□□□□ 0.36
VPS53-210ENST00000571456 AZGP1P25311 298 aaKnown RBP17.29■□□□□ 0.36
VPS53-210ENST00000571456 LRRC28Q86X40 367 aaPredicted RBP17.29■□□□□ 0.36
VPS53-210ENST00000571456 C11orf53Q8IXP5 236 aa17.29■□□□□ 0.36
VPS53-210ENST00000571456 C12orf43Q96C57 262 aaKnown RBP17.29■□□□□ 0.36
VPS53-210ENST00000571456 RAB39BQ96DA2 213 aa17.29■□□□□ 0.36
VPS53-210ENST00000571456 PPP1R3EQ9H7J1 279 aa17.29■□□□□ 0.36
VPS53-210ENST00000571456 FOXJ3Q9UPW0 622 aa17.29■□□□□ 0.36
VPS53-210ENST00000571456 MGAM2Q2M2H8 2515 aa17.29■□□□□ 0.36
VPS53-210ENST00000571456 TRAV38-1A0A0B4J264 116 aa17.28■□□□□ 0.36
VPS53-210ENST00000571456 PNMA8CA0A1B0GUJ8 204 aa17.28■□□□□ 0.36
VPS53-210ENST00000571456 SRRM5B3KS81 715 aa17.28■□□□□ 0.36
VPS53-210ENST00000571456 NOS1APO75052 506 aaPredicted RBP17.28■□□□□ 0.36
VPS53-210ENST00000571456 CYB5AP00167 134 aa17.28■□□□□ 0.36
VPS53-210ENST00000571456 MUC1P15941 1255 aaPredicted RBP17.28■□□□□ 0.36
VPS53-210ENST00000571456 GALP22466 123 aa17.28■□□□□ 0.36
VPS53-210ENST00000571456 GABRA5P31644 462 aa17.28■□□□□ 0.36
VPS53-210ENST00000571456 PMELP40967 661 aa17.28■□□□□ 0.36
VPS53-210ENST00000571456 HAAOP46952 286 aa17.28■□□□□ 0.36
VPS53-210ENST00000571456 SOX2P48431 317 aa17.28■□□□□ 0.36
VPS53-210ENST00000571456 IL24Q13007 206 aa17.28■□□□□ 0.36
VPS53-210ENST00000571456 ARMCX4Q5H9R4 360 aa17.28■□□□□ 0.36
VPS53-210ENST00000571456 LIPKQ5VXJ0 399 aa17.28■□□□□ 0.36
VPS53-210ENST00000571456 TSPAN14Q8NG11 270 aa17.28■□□□□ 0.36
VPS53-210ENST00000571456 OR13C9Q8NGT0 318 aa17.28■□□□□ 0.36
VPS53-210ENST00000571456 AQP3Q92482 292 aa17.28■□□□□ 0.36
VPS53-210ENST00000571456 RHOFQ9HBH0 211 aa17.28■□□□□ 0.36
VPS53-210ENST00000571456 TMEM138Q9NPI0 162 aa17.28■□□□□ 0.36
VPS53-210ENST00000571456 RASL12Q9NYN1 266 aa17.28■□□□□ 0.36
VPS53-210ENST00000571456 A0A096LNT2 108 aa17.27■□□□□ 0.36
VPS53-210ENST00000571456 TRBV5-7A0A0A0MS05 114 aa17.27■□□□□ 0.36
VPS53-210ENST00000571456 FAM230AA0A1W2PPH8 454 aa17.27■□□□□ 0.36
VPS53-210ENST00000571456 LGALS8O00214 317 aa17.27■□□□□ 0.36
VPS53-210ENST00000571456 HAGHLQ6PII5 290 aaPredicted RBP17.27■□□□□ 0.36
VPS53-210ENST00000571456 FAM90A1Q86YD7 464 aa17.27■□□□□ 0.36
VPS53-210ENST00000571456 CDH26Q8IXH8 852 aa17.27■□□□□ 0.36
VPS53-210ENST00000571456 MKXQ8IYA7 352 aa17.27■□□□□ 0.36
VPS53-210ENST00000571456 Q8IYB0 196 aa17.27■□□□□ 0.36
VPS53-210ENST00000571456 GCSAMQ8N6F7 178 aa17.27■□□□□ 0.36
VPS53-210ENST00000571456 LRRC29Q8WV35 223 aa17.27■□□□□ 0.36
VPS53-210ENST00000571456 RPL3LQ92901 407 aaKnown RBP17.27■□□□□ 0.36
VPS53-210ENST00000571456 DERL3Q96Q80 235 aa17.27■□□□□ 0.36
VPS53-210ENST00000571456 FGF23Q9GZV9 251 aaPredicted RBP17.27■□□□□ 0.36
VPS53-210ENST00000571456 TREM2Q9NZC2 230 aa17.27■□□□□ 0.36
VPS53-210ENST00000571456 IGKV1-9A0A0C4DH69 117 aa17.26■□□□□ 0.35
VPS53-210ENST00000571456 IGHV3-64DA0A0J9YX35 117 aa17.26■□□□□ 0.35
VPS53-210ENST00000571456 MEGF11A6BM72 1044 aa17.26■□□□□ 0.35
VPS53-210ENST00000571456 CCRL2O00421 344 aa17.26■□□□□ 0.35
VPS53-210ENST00000571456 SC5DO75845 299 aa17.26■□□□□ 0.35
VPS53-210ENST00000571456 CYB5R3P00387 301 aaPredicted RBP17.26■□□□□ 0.35
VPS53-210ENST00000571456 MTCP1P56278 107 aa17.26■□□□□ 0.35
VPS53-210ENST00000571456 DOC2BQ14184 412 aa17.26■□□□□ 0.35
VPS53-210ENST00000571456 ACSM3Q53FZ2 586 aa17.26■□□□□ 0.35
VPS53-210ENST00000571456 TEX36Q5VZQ5 186 aa17.26■□□□□ 0.35
VPS53-210ENST00000571456 UNQ9370/PRO34162Q6UXP9 181 aa17.26■□□□□ 0.35
VPS53-210ENST00000571456 OR14A2Q96R54 314 aa17.26■□□□□ 0.35
VPS53-210ENST00000571456 GAL3ST1Q99999 423 aa17.26■□□□□ 0.35
VPS53-210ENST00000571456 NDUFB11Q9NX14 153 aa17.26■□□□□ 0.35
VPS53-210ENST00000571456 YLPM1P49750 1951 aaKnown RBP17.26■□□□□ 0.35
VPS53-210ENST00000571456 ISPDA4D126 451 aa17.25■□□□□ 0.35
VPS53-210ENST00000571456 OOEPA6NGQ2 149 aa17.25■□□□□ 0.35
VPS53-210ENST00000571456 SPRY1O43609 319 aaPredicted RBP17.25■□□□□ 0.35
VPS53-210ENST00000571456 ARL6IP5O75915 188 aa17.25■□□□□ 0.35
VPS53-210ENST00000571456 HCKP08631 526 aa17.25■□□□□ 0.35
VPS53-210ENST00000571456 IGFBP3P17936 291 aaPredicted RBP17.25■□□□□ 0.35
VPS53-210ENST00000571456 TGFBR2P37173 567 aa17.25■□□□□ 0.35
VPS53-210ENST00000571456 GZMKP49863 264 aa17.25■□□□□ 0.35
VPS53-210ENST00000571456 ZMYND11Q15326 602 aa17.25■□□□□ 0.35
VPS53-210ENST00000571456 MICBQ29980 383 aa17.25■□□□□ 0.35
VPS53-210ENST00000571456 ZNF404Q494X3 552 aa17.25■□□□□ 0.35
VPS53-210ENST00000571456 SYT6Q5T7P8 510 aaPredicted RBP17.25■□□□□ 0.35
VPS53-210ENST00000571456 DCDC5Q6ZRR9 648 aa17.25■□□□□ 0.35
VPS53-210ENST00000571456 ZNF826PQ6ZT77 177 aa17.25■□□□□ 0.35
VPS53-210ENST00000571456 SAXO1Q8IYX7 474 aa17.25■□□□□ 0.35
VPS53-210ENST00000571456 NKAIN3Q8N8D7 197 aa17.25■□□□□ 0.35
VPS53-210ENST00000571456 ZSCAN4Q8NAM6 433 aaPredicted RBP17.25■□□□□ 0.35
VPS53-210ENST00000571456 POC1AQ8NBT0 407 aa17.25■□□□□ 0.35
VPS53-210ENST00000571456 TRMT10AQ8TBZ6 339 aaKnown RBP17.25■□□□□ 0.35
VPS53-210ENST00000571456 TMED9Q9BVK6 235 aa17.25■□□□□ 0.35
VPS53-210ENST00000571456 DNTTIP1Q9H147 329 aa17.25■□□□□ 0.35
VPS53-210ENST00000571456 MIOXQ9UGB7 285 aa17.25■□□□□ 0.35
VPS53-210ENST00000571456 PCDHB10Q9UN67 800 aa17.25■□□□□ 0.35
VPS53-210ENST00000571456 SVEP1Q4LDE5 3571 aa17.25■□□□□ 0.35
VPS53-210ENST00000571456 IGHV4-61A0A0C4DH41 118 aa17.24■□□□□ 0.35
VPS53-210ENST00000571456 RGS9O75916 674 aaPredicted RBP17.24■□□□□ 0.35
VPS53-210ENST00000571456 PGA5P0DJD9 388 aa17.24■□□□□ 0.35
VPS53-210ENST00000571456 PSMB9P28065 219 aa17.24■□□□□ 0.35
VPS53-210ENST00000571456 BDKRB2P30411 391 aa17.24■□□□□ 0.35
VPS53-210ENST00000571456 RANBP1P43487 201 aa17.24■□□□□ 0.35
VPS53-210ENST00000571456 AVPI1Q5T686 147 aa17.24■□□□□ 0.35
VPS53-210ENST00000571456 OR13C5Q8NGS8 318 aa17.24■□□□□ 0.35
VPS53-210ENST00000571456 CLDND2Q8NHS1 167 aa17.24■□□□□ 0.35
VPS53-210ENST00000571456 NPRL2Q8WTW4 380 aa17.24■□□□□ 0.35
VPS53-210ENST00000571456 C1orf159Q96HA4 380 aa17.24■□□□□ 0.35
VPS53-210ENST00000571456 BEX2Q9BXY8 128 aa17.24■□□□□ 0.35
VPS53-210ENST00000571456 SLITRK2Q9H156 845 aa17.24■□□□□ 0.35
VPS53-210ENST00000571456 TMEM165Q9HC07 324 aa17.24■□□□□ 0.35
VPS53-210ENST00000571456 TAS2R4Q9NYW5 299 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms