RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 PNLDC1Q8NA58 520 aaKnown RBP12.42□□□□□ -0.42
VPS39-210ENST00000568357 LY6G5BQ8NDX9 201 aa12.42□□□□□ -0.42
VPS39-210ENST00000568357 CCDC54Q8NEL0 328 aa12.42□□□□□ -0.42
VPS39-210ENST00000568357 OR52I1Q8NGK6 324 aa12.42□□□□□ -0.42
VPS39-210ENST00000568357 TRMT10AQ8TBZ6 339 aaKnown RBP12.42□□□□□ -0.42
VPS39-210ENST00000568357 NPRL2Q8WTW4 380 aa12.42□□□□□ -0.42
VPS39-210ENST00000568357 ZNF48Q96MX3 618 aaPredicted RBP12.42□□□□□ -0.42
VPS39-210ENST00000568357 TBX15Q96SF7 602 aa12.42□□□□□ -0.42
VPS39-210ENST00000568357 ALG8Q9BVK2 526 aa12.42□□□□□ -0.42
VPS39-210ENST00000568357 DNTTIP1Q9H147 329 aa12.42□□□□□ -0.42
VPS39-210ENST00000568357 PLEKHA1Q9HB21 404 aa12.42□□□□□ -0.42
VPS39-210ENST00000568357 ERVK13-1Q9NX77 482 aa12.42□□□□□ -0.42
VPS39-210ENST00000568357 RPUSD1Q9UJJ7 312 aaKnown RBP12.42□□□□□ -0.42
VPS39-210ENST00000568357 ZNF222Q9UK12 451 aa12.42□□□□□ -0.42
VPS39-210ENST00000568357 RPL36Q9Y3U8 105 aaKnown RBP12.42□□□□□ -0.42
VPS39-210ENST00000568357 MAB21L2Q9Y586 359 aa12.42□□□□□ -0.42
VPS39-210ENST00000568357 IGKV1-27A0A075B6S5 117 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 TRAV40A0A0B4J280 105 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 FAM230AA0A1W2PPH8 454 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 OR4C45A6NMZ5 311 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 E9PI62 339 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 J3QT63 122 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 NOS1APO75052 506 aaPredicted RBP12.41□□□□□ -0.42
VPS39-210ENST00000568357 TOX4O94842 621 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 ISG15P05161 165 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 HTR1AP08908 422 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 PGA5P0DJD9 388 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 GABRA2P47869 451 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 CCR9P51686 369 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 ADARB1P78563 741 aaKnown RBP12.41□□□□□ -0.42
VPS39-210ENST00000568357 LRRC10Q5BKY1 277 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 ZNF691Q5VV52 312 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 TMEM244Q5VVB8 128 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 ACP7Q6ZNF0 438 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 BATF2Q8N1L9 274 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 PACRGLQ8N7B6 248 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 POC1AQ8NBT0 407 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 OR10AC1Q8NH08 325 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 CNIH3Q8TBE1 160 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 CYGBQ8WWM9 190 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 ADAT3Q96EY9 351 aaPredicted RBP12.41□□□□□ -0.42
VPS39-210ENST00000568357 MED30Q96HR3 178 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 WDFY2Q96P53 400 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 PCGF1Q9BSM1 259 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 CHST5Q9GZS9 411 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 MS4A7Q9GZW8 240 aaPredicted RBP12.41□□□□□ -0.42
VPS39-210ENST00000568357 SIRPDQ9H106 197 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 CNTD2Q9H8S5 307 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 RASL12Q9NYN1 266 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 SLC7A11Q9UPY5 501 aa12.41□□□□□ -0.42
VPS39-210ENST00000568357 SIGLEC5O15389 551 aa12.4□□□□□ -0.42
VPS39-210ENST00000568357 MPZP25189 248 aa12.4□□□□□ -0.42
VPS39-210ENST00000568357 ACTA2P62736 377 aa12.4□□□□□ -0.42
VPS39-210ENST00000568357 ACTG2P63267 376 aa12.4□□□□□ -0.42
VPS39-210ENST00000568357 IL13RA1P78552 427 aa12.4□□□□□ -0.42
VPS39-210ENST00000568357 ALKBH1Q13686 389 aaKnown RBP12.4□□□□□ -0.42
VPS39-210ENST00000568357 KLHL22Q53GT1 634 aa12.4□□□□□ -0.42
VPS39-210ENST00000568357 BRD3OSQ6XYD6 125 aa12.4□□□□□ -0.42
VPS39-210ENST00000568357 C9orf139Q6ZV77 190 aa12.4□□□□□ -0.42
VPS39-210ENST00000568357 SYS1Q8N2H4 156 aa12.4□□□□□ -0.42
VPS39-210ENST00000568357 CD177Q8N6Q3 437 aa12.4□□□□□ -0.42
VPS39-210ENST00000568357 ZNRF1Q8ND25 227 aa12.4□□□□□ -0.42
VPS39-210ENST00000568357 OR51A4Q8NGJ6 313 aa12.4□□□□□ -0.42
VPS39-210ENST00000568357 ZFAND2BQ8WV99 257 aa12.4□□□□□ -0.42
VPS39-210ENST00000568357 FGGYQ96C11 551 aa12.4□□□□□ -0.42
VPS39-210ENST00000568357 C10orf35Q96D05 121 aa12.4□□□□□ -0.42
VPS39-210ENST00000568357 JMJD8Q96S16 334 aa12.4□□□□□ -0.42
VPS39-210ENST00000568357 NRIP2Q9BQI9 281 aa12.4□□□□□ -0.42
VPS39-210ENST00000568357 DCTN5Q9BTE1 182 aa12.4□□□□□ -0.42
VPS39-210ENST00000568357 C8orf4Q9NR00 106 aa12.4□□□□□ -0.42
VPS39-210ENST00000568357 INPP5EQ9NRR6 644 aa12.4□□□□□ -0.42
VPS39-210ENST00000568357 SLC25A10Q9UBX3 287 aaPredicted RBP12.4□□□□□ -0.42
VPS39-210ENST00000568357 IGKV1-9A0A0C4DH69 117 aa12.39□□□□□ -0.43
VPS39-210ENST00000568357 CENPVL3A0A0U1RRI6 287 aa12.39□□□□□ -0.43
VPS39-210ENST00000568357 NKX6-3A6NJ46 265 aa12.39□□□□□ -0.43
VPS39-210ENST00000568357 RFPL4AA6NLU0 287 aa12.39□□□□□ -0.43
VPS39-210ENST00000568357 RFPL4AL1F8VTS6 287 aa12.39□□□□□ -0.43
VPS39-210ENST00000568357 F8VVB4 439 aa12.39□□□□□ -0.43
VPS39-210ENST00000568357 F8VWA3 439 aa12.39□□□□□ -0.43
VPS39-210ENST00000568357 CASQ2O14958 399 aaPredicted RBP12.39□□□□□ -0.43
VPS39-210ENST00000568357 GPR37O15354 613 aa12.39□□□□□ -0.43
VPS39-210ENST00000568357 GATBO75879 557 aaKnown RBP12.39□□□□□ -0.43
VPS39-210ENST00000568357 SERPINA3P01011 423 aa12.39□□□□□ -0.43
VPS39-210ENST00000568357 LIMS3P0CW19 117 aa12.39□□□□□ -0.43
VPS39-210ENST00000568357 LIMS4P0CW20 117 aa12.39□□□□□ -0.43
VPS39-210ENST00000568357 CFPP27918 469 aa12.39□□□□□ -0.43
VPS39-210ENST00000568357 FUT6P51993 359 aa12.39□□□□□ -0.43
VPS39-210ENST00000568357 ERVK11-1P61568 191 aa12.39□□□□□ -0.43
VPS39-210ENST00000568357 OGFRL1Q5TC84 451 aaPredicted RBP12.39□□□□□ -0.43
VPS39-210ENST00000568357 METTL11BQ5VVY1 283 aa12.39□□□□□ -0.43
VPS39-210ENST00000568357 TTC23Q5W5X9 447 aa12.39□□□□□ -0.43
VPS39-210ENST00000568357 EGFL6Q8IUX8 553 aa12.39□□□□□ -0.43
VPS39-210ENST00000568357 DHRSXQ8N5I4 330 aa12.39□□□□□ -0.43
VPS39-210ENST00000568357 SDSLQ96GA7 329 aa12.39□□□□□ -0.43
VPS39-210ENST00000568357 MRPL48Q96GC5 212 aaKnown RBP12.39□□□□□ -0.43
VPS39-210ENST00000568357 C1orf147Q96MC9 270 aaPredicted RBP12.39□□□□□ -0.43
VPS39-210ENST00000568357 PKIBQ9C010 78 aa12.39□□□□□ -0.43
VPS39-210ENST00000568357 HES4Q9HCC6 221 aa12.39□□□□□ -0.43
VPS39-210ENST00000568357 FGF20Q9NP95 211 aaPredicted RBP12.39□□□□□ -0.43
VPS39-210ENST00000568357 MTCH1Q9NZJ7 389 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms