RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 NHLRC3Q5JS37 347 aa17.55■□□□□ 0.4
CLN3-230ENST00000568076 MOB3CQ70IA8 216 aa17.55■□□□□ 0.4
CLN3-230ENST00000568076 NAXEQ8NCW5 288 aa17.55■□□□□ 0.4
CLN3-230ENST00000568076 OR5AP2Q8NGF4 316 aa17.55■□□□□ 0.4
CLN3-230ENST00000568076 PIGCQ92535 297 aa17.55■□□□□ 0.4
CLN3-230ENST00000568076 EMG1Q92979 244 aaKnown RBP17.55■□□□□ 0.4
CLN3-230ENST00000568076 MFFQ9GZY8 342 aa17.55■□□□□ 0.4
CLN3-230ENST00000568076 DBX1A6NMT0 343 aa17.55■□□□□ 0.4
CLN3-230ENST00000568076 ACTL6AO96019 429 aa17.55■□□□□ 0.4
CLN3-230ENST00000568076 FPR2P25090 351 aa17.55■□□□□ 0.4
CLN3-230ENST00000568076 OR3A2P47893 321 aa17.55■□□□□ 0.4
CLN3-230ENST00000568076 FUT6P51993 359 aa17.55■□□□□ 0.4
CLN3-230ENST00000568076 TAS2R31P59538 309 aa17.55■□□□□ 0.4
CLN3-230ENST00000568076 TAS2R46P59540 309 aa17.55■□□□□ 0.4
CLN3-230ENST00000568076 BAMBIQ13145 260 aa17.55■□□□□ 0.4
CLN3-230ENST00000568076 SRSF6Q13247 344 aaKnown RBP17.55■□□□□ 0.4
CLN3-230ENST00000568076 PPA1Q15181 289 aa17.55■□□□□ 0.4
CLN3-230ENST00000568076 ESCO2Q56NI9 601 aa17.55■□□□□ 0.4
CLN3-230ENST00000568076 RPUSD3Q6P087 351 aaKnown RBP17.55■□□□□ 0.4
CLN3-230ENST00000568076 OVCH2Q7RTZ1 564 aa17.55■□□□□ 0.4
CLN3-230ENST00000568076 TMEM185AQ8NFB2 350 aa17.55■□□□□ 0.4
CLN3-230ENST00000568076 RTBDNQ9BSG5 229 aaPredicted RBP17.55■□□□□ 0.4
CLN3-230ENST00000568076 PDCD10Q9BUL8 212 aa17.55■□□□□ 0.4
CLN3-230ENST00000568076 GSX2Q9BZM3 304 aa17.55■□□□□ 0.4
CLN3-230ENST00000568076 ZNF701Q9NV72 531 aaPredicted RBP17.55■□□□□ 0.4
CLN3-230ENST00000568076 EHFQ9NZC4 300 aa17.55■□□□□ 0.4
CLN3-230ENST00000568076 CSAG2Q9Y5P2 127 aa17.55■□□□□ 0.4
CLN3-230ENST00000568076 SPAARA0A1B0GVQ0 90 aa17.54■□□□□ 0.4
CLN3-230ENST00000568076 CDRT15L2A8MXV6 281 aa17.54■□□□□ 0.4
CLN3-230ENST00000568076 PI3P19957 117 aa17.54■□□□□ 0.4
CLN3-230ENST00000568076 CAMK2BQ13554 666 aa17.54■□□□□ 0.4
CLN3-230ENST00000568076 RNPS1Q15287 305 aaKnown RBP17.54■□□□□ 0.4
CLN3-230ENST00000568076 TMEM128Q5BJH2 165 aa17.54■□□□□ 0.4
CLN3-230ENST00000568076 PLCXD3Q63HM9 321 aa17.54■□□□□ 0.4
CLN3-230ENST00000568076 KCTD9Q7L273 389 aa17.54■□□□□ 0.4
CLN3-230ENST00000568076 FAAP24Q9BTP7 215 aa17.54■□□□□ 0.4
CLN3-230ENST00000568076 PPA2Q9H2U2 334 aa17.54■□□□□ 0.4
CLN3-230ENST00000568076 ZNF552Q9H707 407 aaPredicted RBP17.54■□□□□ 0.4
CLN3-230ENST00000568076 RP2O75695 350 aa17.53■□□□□ 0.4
CLN3-230ENST00000568076 SFTPBP07988 381 aa17.53■□□□□ 0.4
CLN3-230ENST00000568076 FTH1P19P0C7X4 201 aa17.53■□□□□ 0.4
CLN3-230ENST00000568076 CCNOP22674 350 aa17.53■□□□□ 0.4
CLN3-230ENST00000568076 ARG2P78540 354 aa17.53■□□□□ 0.4
CLN3-230ENST00000568076 PDZK1IP1Q13113 114 aa17.53■□□□□ 0.4
CLN3-230ENST00000568076 PIGYQ3MUY2 71 aa17.53■□□□□ 0.4
CLN3-230ENST00000568076 ZNF766Q5HY98 468 aa17.53■□□□□ 0.4
CLN3-230ENST00000568076 RTL6Q6ICC9 239 aa17.53■□□□□ 0.4
CLN3-230ENST00000568076 TMPRSS7Q7RTY8 843 aa17.53■□□□□ 0.4
CLN3-230ENST00000568076 VASH2Q86V25 355 aa17.53■□□□□ 0.4
CLN3-230ENST00000568076 SPRR3Q9UBC9 169 aa17.53■□□□□ 0.4
CLN3-230ENST00000568076 C5orf49A4QMS7 147 aa17.53■□□□□ 0.4
CLN3-230ENST00000568076 FAM25EA8MYX2 175 aa17.53■□□□□ 0.4
CLN3-230ENST00000568076 ATP1B3P54709 279 aa17.53■□□□□ 0.4
CLN3-230ENST00000568076 FGL1Q08830 312 aa17.53■□□□□ 0.4
CLN3-230ENST00000568076 CHRFAM7AQ494W8 412 aa17.53■□□□□ 0.4
CLN3-230ENST00000568076 LRRC37A5PQ49AS3 106 aa17.53■□□□□ 0.4
CLN3-230ENST00000568076 ZNF546Q86UE3 836 aa17.53■□□□□ 0.4
CLN3-230ENST00000568076 ZSCAN4Q8NAM6 433 aaPredicted RBP17.53■□□□□ 0.4
CLN3-230ENST00000568076 PPP1R1CQ8WVI7 109 aa17.53■□□□□ 0.4
CLN3-230ENST00000568076 WDYHV1Q96HA8 205 aa17.53■□□□□ 0.4
CLN3-230ENST00000568076 REPIN1Q9BWE0 567 aaKnown RBP17.53■□□□□ 0.4
CLN3-230ENST00000568076 CRIM1Q9NZV1 1036 aa17.53■□□□□ 0.4
CLN3-230ENST00000568076 AK3Q9UIJ7 227 aa17.53■□□□□ 0.4
CLN3-230ENST00000568076 GPR160Q9UJ42 338 aa17.53■□□□□ 0.4
CLN3-230ENST00000568076 HSF4Q9ULV5 492 aa17.53■□□□□ 0.4
CLN3-230ENST00000568076 SLC7A11Q9UPY5 501 aa17.53■□□□□ 0.4
CLN3-230ENST00000568076 ZNF850A8MQ14 1090 aa17.52■□□□□ 0.4
CLN3-230ENST00000568076 GEMIN2O14893 280 aaKnown RBP17.52■□□□□ 0.4
CLN3-230ENST00000568076 CD79AP11912 226 aa17.52■□□□□ 0.4
CLN3-230ENST00000568076 CHATP28329 748 aa17.52■□□□□ 0.4
CLN3-230ENST00000568076 AP2S1P53680 142 aaPredicted RBP17.52■□□□□ 0.4
CLN3-230ENST00000568076 SOX8P57073 446 aa17.52■□□□□ 0.4
CLN3-230ENST00000568076 SUPT4H1P63272 117 aaKnown RBP17.52■□□□□ 0.4
CLN3-230ENST00000568076 C11orf87Q6NUJ2 197 aa17.52■□□□□ 0.4
CLN3-230ENST00000568076 TMEM65Q6PI78 240 aa17.52■□□□□ 0.4
CLN3-230ENST00000568076 GSG1LQ6UXU4 331 aa17.52■□□□□ 0.4
CLN3-230ENST00000568076 TMEM17Q86X19 198 aa17.52■□□□□ 0.4
CLN3-230ENST00000568076 CALHM1Q8IU99 346 aa17.52■□□□□ 0.4
CLN3-230ENST00000568076 MCEMP1Q8IX19 187 aa17.52■□□□□ 0.4
CLN3-230ENST00000568076 PXT1Q8NFP0 134 aa17.52■□□□□ 0.4
CLN3-230ENST00000568076 LDAHQ9H6V9 325 aa17.52■□□□□ 0.4
CLN3-230ENST00000568076 IL36GQ9NZH8 169 aa17.52■□□□□ 0.4
CLN3-230ENST00000568076 PRSS50Q9UI38 385 aa17.52■□□□□ 0.4
CLN3-230ENST00000568076 CDK2AP1O14519 115 aa17.51■□□□□ 0.39
CLN3-230ENST00000568076 SFT2D2O95562 160 aa17.51■□□□□ 0.39
CLN3-230ENST00000568076 COX5BP10606 129 aa17.51■□□□□ 0.39
CLN3-230ENST00000568076 SLC25A4P12235 298 aa17.51■□□□□ 0.39
CLN3-230ENST00000568076 MPGP29372 298 aa17.51■□□□□ 0.39
CLN3-230ENST00000568076 CLEC18BQ6UXF7 455 aa17.51■□□□□ 0.39
CLN3-230ENST00000568076 FBXL14Q8N1E6 418 aa17.51■□□□□ 0.39
CLN3-230ENST00000568076 OSR2Q8N2R0 312 aa17.51■□□□□ 0.39
CLN3-230ENST00000568076 OR56B2PQ8NGI1 322 aa17.51■□□□□ 0.39
CLN3-230ENST00000568076 SULT4A1Q9BR01 284 aa17.51■□□□□ 0.39
CLN3-230ENST00000568076 PRR13Q9NZ81 148 aa17.51■□□□□ 0.39
CLN3-230ENST00000568076 NKX2-8O15522 239 aa17.51■□□□□ 0.39
CLN3-230ENST00000568076 B3GALNT1O75752 331 aa17.51■□□□□ 0.39
CLN3-230ENST00000568076 GLRA1P23415 457 aa17.51■□□□□ 0.39
CLN3-230ENST00000568076 CD82P27701 267 aa17.51■□□□□ 0.39
CLN3-230ENST00000568076 RAB1AP62820 205 aa17.51■□□□□ 0.39
CLN3-230ENST00000568076 SLC9A3R2Q15599 337 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms