RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 A0A1W2PR64 198 aa15.27■□□□□ 0.04
CLN3-218ENST00000565688 A0A1W2PRV1 198 aa15.27■□□□□ 0.04
CLN3-218ENST00000565688 RFPL4AA6NLU0 287 aa15.27■□□□□ 0.04
CLN3-218ENST00000565688 PRR32B1ATL7 298 aa15.27■□□□□ 0.04
CLN3-218ENST00000565688 RFPL4AL1F8VTS6 287 aa15.27■□□□□ 0.04
CLN3-218ENST00000565688 H3BUX3 64 aa15.27■□□□□ 0.04
CLN3-218ENST00000565688 J3QT63 122 aa15.27■□□□□ 0.04
CLN3-218ENST00000565688 GABRA5P31644 462 aa15.27■□□□□ 0.04
CLN3-218ENST00000565688 ESRRGP62508 458 aa15.27■□□□□ 0.04
CLN3-218ENST00000565688 PTGES3Q15185 160 aaKnown RBP15.27■□□□□ 0.04
CLN3-218ENST00000565688 DMRTC1Q5HYR2 192 aa15.27■□□□□ 0.04
CLN3-218ENST00000565688 CLVS2Q5SYC1 327 aa15.27■□□□□ 0.04
CLN3-218ENST00000565688 SLC35E4Q6ICL7 350 aa15.27■□□□□ 0.04
CLN3-218ENST00000565688 HCP5Q6MZN7 132 aa15.27■□□□□ 0.04
CLN3-218ENST00000565688 C11orf88Q6PI97 169 aa15.27■□□□□ 0.04
CLN3-218ENST00000565688 OR5K1Q8NHB7 308 aa15.27■□□□□ 0.04
CLN3-218ENST00000565688 SSX3Q99909 188 aa15.27■□□□□ 0.04
CLN3-218ENST00000565688 RAB18Q9NP72 206 aa15.27■□□□□ 0.04
CLN3-218ENST00000565688 C19orf12Q9NSK7 152 aa15.27■□□□□ 0.04
CLN3-218ENST00000565688 GTF2A1LQ9UNN4 478 aa15.27■□□□□ 0.04
CLN3-218ENST00000565688 COPS3Q9UNS2 423 aa15.27■□□□□ 0.04
CLN3-218ENST00000565688 LOC110117498-PIK3R3F6TDL0 507 aa15.26■□□□□ 0.03
CLN3-218ENST00000565688 DLGAP1O14490 977 aa15.26■□□□□ 0.03
CLN3-218ENST00000565688 PRKYO43930 277 aa15.26■□□□□ 0.03
CLN3-218ENST00000565688 NOS1APO75052 506 aaPredicted RBP15.26■□□□□ 0.03
CLN3-218ENST00000565688 TTRP02766 147 aa15.26■□□□□ 0.03
CLN3-218ENST00000565688 PGA5P0DJD9 388 aa15.26■□□□□ 0.03
CLN3-218ENST00000565688 PRDX2P32119 198 aa15.26■□□□□ 0.03
CLN3-218ENST00000565688 HAAOP46952 286 aa15.26■□□□□ 0.03
CLN3-218ENST00000565688 RPL31P62899 125 aaKnown RBP15.26■□□□□ 0.03
CLN3-218ENST00000565688 MFGE8Q08431 387 aaPredicted RBP15.26■□□□□ 0.03
CLN3-218ENST00000565688 LRRC75BQ2VPJ9 315 aa15.26■□□□□ 0.03
CLN3-218ENST00000565688 BCL2L15Q5TBC7 163 aa15.26■□□□□ 0.03
CLN3-218ENST00000565688 TMEM42Q69YG0 159 aa15.26■□□□□ 0.03
CLN3-218ENST00000565688 ZNF322Q6U7Q0 402 aaPredicted RBP15.26■□□□□ 0.03
CLN3-218ENST00000565688 MEPCEQ7L2J0 689 aaKnown RBP15.26■□□□□ 0.03
CLN3-218ENST00000565688 MEGF9Q9H1U4 602 aa15.26■□□□□ 0.03
CLN3-218ENST00000565688 H2AFY2Q9P0M6 372 aaPredicted RBP15.26■□□□□ 0.03
CLN3-218ENST00000565688 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP15.26■□□□□ 0.03
CLN3-218ENST00000565688 POMPQ9Y244 141 aa15.26■□□□□ 0.03
CLN3-218ENST00000565688 DHRS7CA6NNS2 312 aa15.25■□□□□ 0.03
CLN3-218ENST00000565688 SRSF10O75494 262 aaKnown RBP15.25■□□□□ 0.03
CLN3-218ENST00000565688 NXPH2O95156 264 aa15.25■□□□□ 0.03
CLN3-218ENST00000565688 TSPAN15O95858 294 aa15.25■□□□□ 0.03
CLN3-218ENST00000565688 DAPP51397 102 aa15.25■□□□□ 0.03
CLN3-218ENST00000565688 TMEM200BQ69YZ2 307 aa15.25■□□□□ 0.03
CLN3-218ENST00000565688 SLC35F2Q8IXU6 374 aa15.25■□□□□ 0.03
CLN3-218ENST00000565688 ELMOD2Q8IZ81 293 aa15.25■□□□□ 0.03
CLN3-218ENST00000565688 CD177Q8N6Q3 437 aa15.25■□□□□ 0.03
CLN3-218ENST00000565688 DTX3Q8N9I9 347 aa15.25■□□□□ 0.03
CLN3-218ENST00000565688 OR4C13Q8NGP0 309 aa15.25■□□□□ 0.03
CLN3-218ENST00000565688 PPP1R14AQ96A00 147 aa15.25■□□□□ 0.03
CLN3-218ENST00000565688 NRIP2Q9BQI9 281 aa15.25■□□□□ 0.03
CLN3-218ENST00000565688 TTTY10Q9BZA0 68 aa15.25■□□□□ 0.03
CLN3-218ENST00000565688 USE1Q9NZ43 259 aa15.25■□□□□ 0.03
CLN3-218ENST00000565688 R4GMQ9 66 aa15.25■□□□□ 0.03
CLN3-218ENST00000565688 V9GYS6 101 aa15.25■□□□□ 0.03
CLN3-218ENST00000565688 PQLC2LA1A4F0 135 aa15.24■□□□□ 0.03
CLN3-218ENST00000565688 ZNF670-ZNF695F2Z2N8 137 aa15.24■□□□□ 0.03
CLN3-218ENST00000565688 SYNGR1O43759 233 aa15.24■□□□□ 0.03
CLN3-218ENST00000565688 KIR2DS4P43632 304 aa15.24■□□□□ 0.03
CLN3-218ENST00000565688 CXCR4P61073 352 aa15.24■□□□□ 0.03
CLN3-218ENST00000565688 NXNL2Q5VZ03 156 aa15.24■□□□□ 0.03
CLN3-218ENST00000565688 LIAT1Q6ZQX7 453 aa15.24■□□□□ 0.03
CLN3-218ENST00000565688 Q6ZTK2 550 aa15.24■□□□□ 0.03
CLN3-218ENST00000565688 CALHM1Q8IU99 346 aa15.24■□□□□ 0.03
CLN3-218ENST00000565688 MKXQ8IYA7 352 aa15.24■□□□□ 0.03
CLN3-218ENST00000565688 C17orf50Q8WW18 174 aa15.24■□□□□ 0.03
CLN3-218ENST00000565688 UTP4Q969X6 686 aaKnown RBP15.24■□□□□ 0.03
CLN3-218ENST00000565688 AJUBAQ96IF1 538 aa15.24■□□□□ 0.03
CLN3-218ENST00000565688 ZNF488Q96MN9 340 aa15.24■□□□□ 0.03
CLN3-218ENST00000565688 APOL4Q9BPW4 351 aa15.24■□□□□ 0.03
CLN3-218ENST00000565688 RANBP3Q9H6Z4 567 aaPredicted RBP15.24■□□□□ 0.03
CLN3-218ENST00000565688 KRT84Q9NSB2 600 aa15.24■□□□□ 0.03
CLN3-218ENST00000565688 CLN6Q9NWW5 311 aa15.24■□□□□ 0.03
CLN3-218ENST00000565688 OR52A1Q9UKL2 312 aa15.24■□□□□ 0.03
CLN3-218ENST00000565688 SNX5Q9Y5X3 404 aa15.24■□□□□ 0.03
CLN3-218ENST00000565688 DNAJC8O75937 253 aaPredicted RBP15.23■□□□□ 0.03
CLN3-218ENST00000565688 CSF1P09603 554 aa15.23■□□□□ 0.03
CLN3-218ENST00000565688 MPZP25189 248 aa15.23■□□□□ 0.03
CLN3-218ENST00000565688 LGALS4P56470 323 aa15.23■□□□□ 0.03
CLN3-218ENST00000565688 HERPUD1Q15011 391 aa15.23■□□□□ 0.03
CLN3-218ENST00000565688 AADACL4Q5VUY2 407 aa15.23■□□□□ 0.03
CLN3-218ENST00000565688 ASRGL1Q7L266 308 aa15.23■□□□□ 0.03
CLN3-218ENST00000565688 OR2T27Q8NH04 317 aa15.23■□□□□ 0.03
CLN3-218ENST00000565688 FAM110DQ8TAY7 271 aaPredicted RBP15.23■□□□□ 0.03
CLN3-218ENST00000565688 TMEM163Q8TC26 289 aa15.23■□□□□ 0.03
CLN3-218ENST00000565688 RORBQ92753 470 aa15.23■□□□□ 0.03
CLN3-218ENST00000565688 ADGRL4Q9HBW9 690 aa15.23■□□□□ 0.03
CLN3-218ENST00000565688 HES4Q9HCC6 221 aa15.23■□□□□ 0.03
CLN3-218ENST00000565688 GPR173Q9NS66 373 aa15.23■□□□□ 0.03
CLN3-218ENST00000565688 A0A0G2JK05 382 aa15.22■□□□□ 0.03
CLN3-218ENST00000565688 TK1P04183 234 aa15.22■□□□□ 0.03
CLN3-218ENST00000565688 EFNB2P52799 333 aa15.22■□□□□ 0.03
CLN3-218ENST00000565688 ERVFRD-1P60508 538 aa15.22■□□□□ 0.03
CLN3-218ENST00000565688 EFNB1P98172 346 aa15.22■□□□□ 0.03
CLN3-218ENST00000565688 LY6EQ16553 131 aa15.22■□□□□ 0.03
CLN3-218ENST00000565688 SLX4IPQ5VYV7 408 aa15.22■□□□□ 0.03
CLN3-218ENST00000565688 Q6ZSR3 168 aa15.22■□□□□ 0.03
CLN3-218ENST00000565688 BCDIN3DQ7Z5W3 292 aaKnown RBP15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms