RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 GHSRQ92847 366 aa14.44□□□□□ -0.1
CLN3-217ENST00000565354 OR51I2Q9H344 312 aa14.44□□□□□ -0.1
CLN3-217ENST00000565354 ZCCHC4Q9H5U6 513 aa14.44□□□□□ -0.1
CLN3-217ENST00000565354 LPAR2Q9HBW0 351 aa14.44□□□□□ -0.1
CLN3-217ENST00000565354 DNAJB11Q9UBS4 358 aa14.44□□□□□ -0.1
CLN3-217ENST00000565354 SIRT4Q9Y6E7 314 aaPredicted RBP14.44□□□□□ -0.1
CLN3-217ENST00000565354 PQLC2LA1A4F0 135 aa14.43□□□□□ -0.1
CLN3-217ENST00000565354 B4DSR2 109 aa14.43□□□□□ -0.1
CLN3-217ENST00000565354 J3QT63 122 aa14.43□□□□□ -0.1
CLN3-217ENST00000565354 AKR7A2O43488 359 aa14.43□□□□□ -0.1
CLN3-217ENST00000565354 HSMCR30P0CW71 290 aa14.43□□□□□ -0.1
CLN3-217ENST00000565354 AZGP1P25311 298 aaKnown RBP14.43□□□□□ -0.1
CLN3-217ENST00000565354 GABARAPL2P60520 117 aa14.43□□□□□ -0.1
CLN3-217ENST00000565354 LMO4P61968 165 aa14.43□□□□□ -0.1
CLN3-217ENST00000565354 BDH1Q02338 343 aa14.43□□□□□ -0.1
CLN3-217ENST00000565354 MICBQ29980 383 aa14.43□□□□□ -0.1
CLN3-217ENST00000565354 ZNF404Q494X3 552 aa14.43□□□□□ -0.1
CLN3-217ENST00000565354 YIF1BQ5BJH7 314 aa14.43□□□□□ -0.1
CLN3-217ENST00000565354 NLRC3Q7RTR2 1065 aa14.43□□□□□ -0.1
CLN3-217ENST00000565354 RPS4Y2Q8TD47 263 aa14.43□□□□□ -0.1
CLN3-217ENST00000565354 OR5M11Q96RB7 305 aa14.43□□□□□ -0.1
CLN3-217ENST00000565354 TMEM246Q9BRR3 403 aa14.43□□□□□ -0.1
CLN3-217ENST00000565354 PATZ1Q9HBE1 687 aaKnown RBP14.43□□□□□ -0.1
CLN3-217ENST00000565354 TMEM165Q9HC07 324 aa14.43□□□□□ -0.1
CLN3-217ENST00000565354 MIOXQ9UGB7 285 aa14.43□□□□□ -0.1
CLN3-217ENST00000565354 POLDIP2Q9Y2S7 368 aa14.43□□□□□ -0.1
CLN3-217ENST00000565354 IGHV3OR15-7A0A075B7D8 119 aa14.42□□□□□ -0.1
CLN3-217ENST00000565354 CEACAM18A8MTB9 384 aa14.42□□□□□ -0.1
CLN3-217ENST00000565354 FAM157AC9JC47 383 aa14.42□□□□□ -0.1
CLN3-217ENST00000565354 MAGEB3O15480 346 aa14.42□□□□□ -0.1
CLN3-217ENST00000565354 PLATP00750 562 aa14.42□□□□□ -0.1
CLN3-217ENST00000565354 HCKP08631 526 aa14.42□□□□□ -0.1
CLN3-217ENST00000565354 EGR1P18146 543 aa14.42□□□□□ -0.1
CLN3-217ENST00000565354 GLRA1P23415 457 aa14.42□□□□□ -0.1
CLN3-217ENST00000565354 RBP2P50120 134 aa14.42□□□□□ -0.1
CLN3-217ENST00000565354 HOXA4Q00056 320 aaPredicted RBP14.42□□□□□ -0.1
CLN3-217ENST00000565354 IRF3Q14653 427 aa14.42□□□□□ -0.1
CLN3-217ENST00000565354 DCDC5Q6ZRR9 648 aa14.42□□□□□ -0.1
CLN3-217ENST00000565354 LHFPL2Q6ZUX7 228 aa14.42□□□□□ -0.1
CLN3-217ENST00000565354 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.42□□□□□ -0.1
CLN3-217ENST00000565354 DNAAF1Q8NEP3 725 aa14.42□□□□□ -0.1
CLN3-217ENST00000565354 OR8B3Q8NGG8 313 aa14.42□□□□□ -0.1
CLN3-217ENST00000565354 OR51F2Q8NH61 342 aa14.42□□□□□ -0.1
CLN3-217ENST00000565354 AQP3Q92482 292 aa14.42□□□□□ -0.1
CLN3-217ENST00000565354 RGP1Q92546 391 aaPredicted RBP14.42□□□□□ -0.1
CLN3-217ENST00000565354 UFD1Q92890 307 aa14.42□□□□□ -0.1
CLN3-217ENST00000565354 TMEM106AQ96A25 262 aa14.42□□□□□ -0.1
CLN3-217ENST00000565354 SPSB1Q96BD6 273 aa14.42□□□□□ -0.1
CLN3-217ENST00000565354 OPALINQ96PE5 141 aa14.42□□□□□ -0.1
CLN3-217ENST00000565354 OR8B2Q96RD0 313 aa14.42□□□□□ -0.1
CLN3-217ENST00000565354 YTHDF1Q9BYJ9 559 aaKnown RBP14.42□□□□□ -0.1
CLN3-217ENST00000565354 TGP01266 2768 aa14.41□□□□□ -0.1
CLN3-217ENST00000565354 PKD1L1Q8TDX9 2849 aa14.41□□□□□ -0.1
CLN3-217ENST00000565354 SRRM5B3KS81 715 aa14.41□□□□□ -0.1
CLN3-217ENST00000565354 PLPP2O43688 288 aa14.41□□□□□ -0.1
CLN3-217ENST00000565354 RHBDL1O75783 438 aa14.41□□□□□ -0.1
CLN3-217ENST00000565354 FSTL3O95633 263 aa14.41□□□□□ -0.1
CLN3-217ENST00000565354 CYB5AP00167 134 aa14.41□□□□□ -0.1
CLN3-217ENST00000565354 LHBP01229 141 aa14.41□□□□□ -0.1
CLN3-217ENST00000565354 GYPAP02724 150 aa14.41□□□□□ -0.1
CLN3-217ENST00000565354 CFHR2P36980 270 aa14.41□□□□□ -0.1
CLN3-217ENST00000565354 MAP2K4P45985 399 aa14.41□□□□□ -0.1
CLN3-217ENST00000565354 POU3F4P49335 361 aa14.41□□□□□ -0.1
CLN3-217ENST00000565354 MTCP1P56278 107 aa14.41□□□□□ -0.1
CLN3-217ENST00000565354 PPP3R1P63098 170 aa14.41□□□□□ -0.1
CLN3-217ENST00000565354 ACSM1Q08AH1 577 aa14.41□□□□□ -0.1
CLN3-217ENST00000565354 Q499Y3 187 aa14.41□□□□□ -0.1
CLN3-217ENST00000565354 ESCO2Q56NI9 601 aa14.41□□□□□ -0.1
CLN3-217ENST00000565354 GLCCI1Q86VQ1 547 aa14.41□□□□□ -0.1
CLN3-217ENST00000565354 ANGPTL5Q86XS5 388 aa14.41□□□□□ -0.1
CLN3-217ENST00000565354 SVOPQ8N4V2 548 aa14.41□□□□□ -0.1
CLN3-217ENST00000565354 PARP16Q8N5Y8 322 aa14.41□□□□□ -0.1
CLN3-217ENST00000565354 OR13C5Q8NGS8 318 aa14.41□□□□□ -0.1
CLN3-217ENST00000565354 TMIGD2Q96BF3 282 aa14.41□□□□□ -0.1
CLN3-217ENST00000565354 NEIL1Q96FI4 390 aaPredicted RBP14.41□□□□□ -0.1
CLN3-217ENST00000565354 PKIBQ9C010 78 aa14.41□□□□□ -0.1
CLN3-217ENST00000565354 ADAM20O43506 726 aa14.4□□□□□ -0.1
CLN3-217ENST00000565354 NDUFA2O43678 99 aa14.4□□□□□ -0.1
CLN3-217ENST00000565354 SULT1B1O43704 296 aa14.4□□□□□ -0.1
CLN3-217ENST00000565354 SYNGR1O43759 233 aa14.4□□□□□ -0.1
CLN3-217ENST00000565354 MRPS14O60783 128 aaKnown RBP14.4□□□□□ -0.1
CLN3-217ENST00000565354 FOXH1O75593 365 aa14.4□□□□□ -0.1
CLN3-217ENST00000565354 CD1AP06126 327 aa14.4□□□□□ -0.1
CLN3-217ENST00000565354 MSMBP08118 114 aa14.4□□□□□ -0.1
CLN3-217ENST00000565354 MUC1P15941 1255 aaPredicted RBP14.4□□□□□ -0.1
CLN3-217ENST00000565354 RAB3AP20336 220 aa14.4□□□□□ -0.1
CLN3-217ENST00000565354 TEX36Q5VZQ5 186 aa14.4□□□□□ -0.1
CLN3-217ENST00000565354 THRSPQ92748 146 aa14.4□□□□□ -0.1
CLN3-217ENST00000565354 CPNE2Q96FN4 548 aaPredicted RBP14.4□□□□□ -0.1
CLN3-217ENST00000565354 PGLYRP3Q96LB9 341 aa14.4□□□□□ -0.1
CLN3-217ENST00000565354 TAS2R4Q9NYW5 299 aa14.4□□□□□ -0.1
CLN3-217ENST00000565354 CKLFQ9UBR5 152 aa14.4□□□□□ -0.1
CLN3-217ENST00000565354 LSM2Q9Y333 95 aaKnown RBP14.4□□□□□ -0.1
CLN3-217ENST00000565354 IGKV1-9A0A0C4DH69 117 aa14.39□□□□□ -0.11
CLN3-217ENST00000565354 NKX6-3A6NJ46 265 aa14.39□□□□□ -0.11
CLN3-217ENST00000565354 KCNAB3O43448 404 aa14.39□□□□□ -0.11
CLN3-217ENST00000565354 INMTO95050 263 aa14.39□□□□□ -0.11
CLN3-217ENST00000565354 NXPH2O95156 264 aa14.39□□□□□ -0.11
CLN3-217ENST00000565354 CPT2P23786 658 aa14.39□□□□□ -0.11
CLN3-217ENST00000565354 SRP14P37108 136 aaKnown RBP14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms