RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 RIDAP52758 137 aaKnown RBP13.92□□□□□ -0.18
CLN3-216ENST00000565316 EFNB2P52799 333 aa13.92□□□□□ -0.18
CLN3-216ENST00000565316 CBX1P83916 185 aa13.92□□□□□ -0.18
CLN3-216ENST00000565316 MFGE8Q08431 387 aaPredicted RBP13.92□□□□□ -0.18
CLN3-216ENST00000565316 LRRC75BQ2VPJ9 315 aa13.92□□□□□ -0.18
CLN3-216ENST00000565316 LCN1P1Q5VSP4 162 aa13.92□□□□□ -0.18
CLN3-216ENST00000565316 TMEM200BQ69YZ2 307 aa13.92□□□□□ -0.18
CLN3-216ENST00000565316 FAHD1Q6P587 224 aa13.92□□□□□ -0.18
CLN3-216ENST00000565316 MKXQ8IYA7 352 aa13.92□□□□□ -0.18
CLN3-216ENST00000565316 ZNF561Q8N587 486 aa13.92□□□□□ -0.18
CLN3-216ENST00000565316 FAM110DQ8TAY7 271 aaPredicted RBP13.92□□□□□ -0.18
CLN3-216ENST00000565316 RORBQ92753 470 aa13.92□□□□□ -0.18
CLN3-216ENST00000565316 NRBF2Q96F24 287 aa13.92□□□□□ -0.18
CLN3-216ENST00000565316 HEXA-AS1Q9H8Q6 139 aa13.92□□□□□ -0.18
CLN3-216ENST00000565316 J3QT63 122 aa13.91□□□□□ -0.18
CLN3-216ENST00000565316 TTRP02766 147 aa13.91□□□□□ -0.18
CLN3-216ENST00000565316 CAPZA1P52907 286 aa13.91□□□□□ -0.18
CLN3-216ENST00000565316 RPL31P62899 125 aaKnown RBP13.91□□□□□ -0.18
CLN3-216ENST00000565316 HERPUD1Q15011 391 aa13.91□□□□□ -0.18
CLN3-216ENST00000565316 ZNF684Q5T5D7 378 aa13.91□□□□□ -0.18
CLN3-216ENST00000565316 C11orf88Q6PI97 169 aa13.91□□□□□ -0.18
CLN3-216ENST00000565316 Q6ZSR3 168 aa13.91□□□□□ -0.18
CLN3-216ENST00000565316 COMMD2Q86X83 199 aa13.91□□□□□ -0.18
CLN3-216ENST00000565316 ZNF573Q86YE8 665 aa13.91□□□□□ -0.18
CLN3-216ENST00000565316 OR51G2Q8NGK0 314 aa13.91□□□□□ -0.18
CLN3-216ENST00000565316 ZNF488Q96MN9 340 aa13.91□□□□□ -0.18
CLN3-216ENST00000565316 CNN2Q99439 309 aaKnown RBP13.91□□□□□ -0.18
CLN3-216ENST00000565316 NRIP2Q9BQI9 281 aa13.91□□□□□ -0.18
CLN3-216ENST00000565316 RANBP3Q9H6Z4 567 aaPredicted RBP13.91□□□□□ -0.18
CLN3-216ENST00000565316 PAPOLBQ9NRJ5 636 aaKnown RBP13.91□□□□□ -0.18
CLN3-216ENST00000565316 SIGLEC9Q9Y336 463 aa13.91□□□□□ -0.18
CLN3-216ENST00000565316 A0A1W2PPH5 198 aa13.9□□□□□ -0.18
CLN3-216ENST00000565316 PQLC2LA1A4F0 135 aa13.9□□□□□ -0.18
CLN3-216ENST00000565316 MEGF11A6BM72 1044 aa13.9□□□□□ -0.18
CLN3-216ENST00000565316 SLC1A7O00341 560 aa13.9□□□□□ -0.18
CLN3-216ENST00000565316 DLGAP1O14490 977 aa13.9□□□□□ -0.18
CLN3-216ENST00000565316 SYNGR1O43759 233 aa13.9□□□□□ -0.18
CLN3-216ENST00000565316 PRKYO43930 277 aa13.9□□□□□ -0.18
CLN3-216ENST00000565316 CSF1P09603 554 aa13.9□□□□□ -0.18
CLN3-216ENST00000565316 MPZP25189 248 aa13.9□□□□□ -0.18
CLN3-216ENST00000565316 DAPP51397 102 aa13.9□□□□□ -0.18
CLN3-216ENST00000565316 EFNB1P98172 346 aa13.9□□□□□ -0.18
CLN3-216ENST00000565316 FLOT2Q14254 428 aa13.9□□□□□ -0.18
CLN3-216ENST00000565316 CLVS2Q5SYC1 327 aa13.9□□□□□ -0.18
CLN3-216ENST00000565316 ZNF322Q6U7Q0 402 aaPredicted RBP13.9□□□□□ -0.18
CLN3-216ENST00000565316 MEPCEQ7L2J0 689 aaKnown RBP13.9□□□□□ -0.18
CLN3-216ENST00000565316 SPATA24Q86W54 205 aa13.9□□□□□ -0.18
CLN3-216ENST00000565316 ELMOD2Q8IZ81 293 aa13.9□□□□□ -0.18
CLN3-216ENST00000565316 PIFOQ8TCI5 191 aa13.9□□□□□ -0.18
CLN3-216ENST00000565316 CFHR4Q92496 578 aa13.9□□□□□ -0.18
CLN3-216ENST00000565316 MOB1AQ9H8S9 216 aa13.9□□□□□ -0.18
CLN3-216ENST00000565316 HES4Q9HCC6 221 aa13.9□□□□□ -0.18
CLN3-216ENST00000565316 RAB18Q9NP72 206 aa13.9□□□□□ -0.18
CLN3-216ENST00000565316 V9GYS6 101 aa13.9□□□□□ -0.18
CLN3-216ENST00000565316 A0A1B0GTI1 187 aa13.9□□□□□ -0.19
CLN3-216ENST00000565316 DHRS7CA6NNS2 312 aa13.9□□□□□ -0.19
CLN3-216ENST00000565316 HAAOP46952 286 aa13.9□□□□□ -0.19
CLN3-216ENST00000565316 PTGES3Q15185 160 aaKnown RBP13.9□□□□□ -0.19
CLN3-216ENST00000565316 LY6EQ16553 131 aa13.9□□□□□ -0.19
CLN3-216ENST00000565316 AADACL4Q5VUY2 407 aa13.9□□□□□ -0.19
CLN3-216ENST00000565316 LIAT1Q6ZQX7 453 aa13.9□□□□□ -0.19
CLN3-216ENST00000565316 Q6ZTK2 550 aa13.9□□□□□ -0.19
CLN3-216ENST00000565316 CALHM1Q8IU99 346 aa13.9□□□□□ -0.19
CLN3-216ENST00000565316 OR4C13Q8NGP0 309 aa13.9□□□□□ -0.19
CLN3-216ENST00000565316 OR14K1Q8NGZ2 314 aa13.9□□□□□ -0.19
CLN3-216ENST00000565316 UTP4Q969X6 686 aaKnown RBP13.9□□□□□ -0.19
CLN3-216ENST00000565316 MNTQ99583 582 aa13.9□□□□□ -0.19
CLN3-216ENST00000565316 APOL4Q9BPW4 351 aa13.9□□□□□ -0.19
CLN3-216ENST00000565316 TTTY10Q9BZA0 68 aa13.9□□□□□ -0.19
CLN3-216ENST00000565316 USE1Q9NZ43 259 aa13.9□□□□□ -0.19
CLN3-216ENST00000565316 IKZF2Q9UKS7 526 aa13.9□□□□□ -0.19
CLN3-216ENST00000565316 POLDIP2Q9Y2S7 368 aa13.9□□□□□ -0.19
CLN3-216ENST00000565316 R4GMQ9 66 aa13.9□□□□□ -0.19
CLN3-216ENST00000565316 FAM90A8PA6NJQ4 464 aa13.89□□□□□ -0.19
CLN3-216ENST00000565316 LOC110117498-PIK3R3F6TDL0 507 aa13.89□□□□□ -0.19
CLN3-216ENST00000565316 DLX6P56179 175 aa13.89□□□□□ -0.19
CLN3-216ENST00000565316 ERVK11-1P61568 191 aa13.89□□□□□ -0.19
CLN3-216ENST00000565316 ESRRGP62508 458 aa13.89□□□□□ -0.19
CLN3-216ENST00000565316 BCDIN3DQ7Z5W3 292 aaKnown RBP13.89□□□□□ -0.19
CLN3-216ENST00000565316 C1QL4Q86Z23 238 aa13.89□□□□□ -0.19
CLN3-216ENST00000565316 OR2T27Q8NH04 317 aa13.89□□□□□ -0.19
CLN3-216ENST00000565316 ADGRL4Q9HBW9 690 aa13.89□□□□□ -0.19
CLN3-216ENST00000565316 GPR173Q9NS66 373 aa13.89□□□□□ -0.19
CLN3-216ENST00000565316 OR52A1Q9UKL2 312 aa13.89□□□□□ -0.19
CLN3-216ENST00000565316 POMPQ9Y244 141 aa13.89□□□□□ -0.19
CLN3-216ENST00000565316 hCG_1809904A0A1W2PP81 198 aa13.88□□□□□ -0.19
CLN3-216ENST00000565316 A0A1W2PPE2 198 aa13.88□□□□□ -0.19
CLN3-216ENST00000565316 A0A1W2PR64 198 aa13.88□□□□□ -0.19
CLN3-216ENST00000565316 A0A1W2PRV1 198 aa13.88□□□□□ -0.19
CLN3-216ENST00000565316 VGLL3A8MV65 326 aa13.88□□□□□ -0.19
CLN3-216ENST00000565316 CHST1O43916 411 aa13.88□□□□□ -0.19
CLN3-216ENST00000565316 NXPH2O95156 264 aa13.88□□□□□ -0.19
CLN3-216ENST00000565316 TK1P04183 234 aa13.88□□□□□ -0.19
CLN3-216ENST00000565316 CCL3L1P16619 93 aa13.88□□□□□ -0.19
CLN3-216ENST00000565316 CCL1P22362 96 aa13.88□□□□□ -0.19
CLN3-216ENST00000565316 PAX6P26367 422 aa13.88□□□□□ -0.19
CLN3-216ENST00000565316 CEBPDP49716 269 aaPredicted RBP13.88□□□□□ -0.19
CLN3-216ENST00000565316 BMXP51813 675 aa13.88□□□□□ -0.19
CLN3-216ENST00000565316 CXCR4P61073 352 aa13.88□□□□□ -0.19
CLN3-216ENST00000565316 ACTR3P61158 418 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms