RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 TEX13DA0A0J9YY54 714 aaPredicted RBP11.78□□□□□ -0.52
CLK3-215ENST00000564353 ETV2O00321 342 aaPredicted RBP11.78□□□□□ -0.52
CLK3-215ENST00000564353 KLF7O75840 302 aaPredicted RBP11.78□□□□□ -0.52
CLK3-215ENST00000564353 DHRS3O75911 302 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 KLK3P07288 261 aaPredicted RBP11.78□□□□□ -0.52
CLK3-215ENST00000564353 SFTPCP11686 197 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 COX6A1P12074 109 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 CCL2P13500 99 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 BPIFB3P59826 476 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 PHLDA2Q53GA4 152 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 BAP18Q8IXM2 172 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 ZIC4Q8N9L1 334 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 OR14L1PQ8NHC6 308 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 RNF138Q8WVD3 245 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 NXT1Q9UKK6 140 aaKnown RBP11.78□□□□□ -0.52
CLK3-215ENST00000564353 ADAMTS9Q9P2N4 1935 aa11.77□□□□□ -0.52
CLK3-215ENST00000564353 IGKV1-27A0A075B6S5 117 aa11.77□□□□□ -0.53
CLK3-215ENST00000564353 LIFP15018 202 aa11.77□□□□□ -0.53
CLK3-215ENST00000564353 ASCL1P50553 236 aa11.77□□□□□ -0.53
CLK3-215ENST00000564353 ECH1Q13011 328 aa11.77□□□□□ -0.53
CLK3-215ENST00000564353 CYB5R2Q6BCY4 276 aa11.77□□□□□ -0.53
CLK3-215ENST00000564353 SLC16A13Q7RTY0 426 aa11.77□□□□□ -0.53
CLK3-215ENST00000564353 NECAB3Q96P71 396 aaPredicted RBP11.77□□□□□ -0.53
CLK3-215ENST00000564353 DUSP23Q9BVJ7 150 aa11.77□□□□□ -0.53
CLK3-215ENST00000564353 TPT1P13693 172 aaKnown RBP11.77□□□□□ -0.53
CLK3-215ENST00000564353 EIF1P41567 113 aaKnown RBP11.77□□□□□ -0.53
CLK3-215ENST00000564353 BLOC1S1P78537 153 aa11.77□□□□□ -0.53
CLK3-215ENST00000564353 H3F3AP84243 136 aa11.77□□□□□ -0.53
CLK3-215ENST00000564353 SRYQ05066 204 aa11.77□□□□□ -0.53
CLK3-215ENST00000564353 IAH1Q2TAA2 248 aaPredicted RBP11.77□□□□□ -0.53
CLK3-215ENST00000564353 WIPI1Q5MNZ9 446 aaPredicted RBP11.77□□□□□ -0.53
CLK3-215ENST00000564353 RPS19BP1Q86WX3 136 aaKnown RBP11.77□□□□□ -0.53
CLK3-215ENST00000564353 STX12Q86Y82 276 aa11.77□□□□□ -0.53
CLK3-215ENST00000564353 TLNRD1Q9H1K6 362 aa11.77□□□□□ -0.53
CLK3-215ENST00000564353 PCDHGA1Q9Y5H4 931 aa11.77□□□□□ -0.53
CLK3-215ENST00000564353 B3GALT1Q9Y5Z6 326 aa11.77□□□□□ -0.53
CLK3-215ENST00000564353 IGLV3-32A0A0A0MS00 114 aa11.76□□□□□ -0.53
CLK3-215ENST00000564353 NSG1A0A0A6YYJ2 146 aa11.76□□□□□ -0.53
CLK3-215ENST00000564353 ZNF850A8MQ14 1090 aa11.76□□□□□ -0.53
CLK3-215ENST00000564353 CXCL13O43927 109 aa11.76□□□□□ -0.53
CLK3-215ENST00000564353 LRP3O75074 770 aa11.76□□□□□ -0.53
CLK3-215ENST00000564353 CSTBP04080 98 aaKnown RBP11.76□□□□□ -0.53
CLK3-215ENST00000564353 AKR1C3P42330 323 aa11.76□□□□□ -0.53
CLK3-215ENST00000564353 SSR4P51571 173 aa11.76□□□□□ -0.53
CLK3-215ENST00000564353 SRSF4Q08170 494 aaKnown RBP11.76□□□□□ -0.53
CLK3-215ENST00000564353 RSU1Q15404 277 aa11.76□□□□□ -0.53
CLK3-215ENST00000564353 BEND4Q6ZU67 534 aa11.76□□□□□ -0.53
CLK3-215ENST00000564353 CLRN3Q8NCR9 226 aa11.76□□□□□ -0.53
CLK3-215ENST00000564353 ZNF845Q96IR2 970 aaPredicted RBP11.76□□□□□ -0.53
CLK3-215ENST00000564353 OCSTAMPQ9BR26 566 aa11.76□□□□□ -0.53
CLK3-215ENST00000564353 OSGIN2Q9Y236 505 aa11.76□□□□□ -0.53
CLK3-215ENST00000564353 R4GN57 208 aa11.76□□□□□ -0.53
CLK3-215ENST00000564353 HSPB6O14558 160 aa11.76□□□□□ -0.53
CLK3-215ENST00000564353 GEMIN2O14893 280 aaKnown RBP11.76□□□□□ -0.53
CLK3-215ENST00000564353 TOX3O15405 576 aaPredicted RBP11.76□□□□□ -0.53
CLK3-215ENST00000564353 XRCC2O43543 280 aa11.76□□□□□ -0.53
CLK3-215ENST00000564353 DIRAS3O95661 229 aa11.76□□□□□ -0.53
CLK3-215ENST00000564353 ZNF806P0C7X5 589 aa11.76□□□□□ -0.53
CLK3-215ENST00000564353 HLA-GP17693 338 aa11.76□□□□□ -0.53
CLK3-215ENST00000564353 FPR2P25090 351 aa11.76□□□□□ -0.53
CLK3-215ENST00000564353 NFYBP25208 207 aa11.76□□□□□ -0.53
CLK3-215ENST00000564353 VAX1Q5SQQ9 334 aa11.76□□□□□ -0.53
CLK3-215ENST00000564353 ARRDC1Q8N5I2 433 aa11.76□□□□□ -0.53
CLK3-215ENST00000564353 OR4A4PQ8NGN8 299 aa11.76□□□□□ -0.53
CLK3-215ENST00000564353 SLC25A43Q8WUT9 341 aaPredicted RBP11.76□□□□□ -0.53
CLK3-215ENST00000564353 MRPL24Q96A35 216 aaKnown RBP11.76□□□□□ -0.53
CLK3-215ENST00000564353 BSCL2Q96G97 398 aaPredicted RBP11.76□□□□□ -0.53
CLK3-215ENST00000564353 MARS2Q96GW9 593 aaKnown RBP11.76□□□□□ -0.53
CLK3-215ENST00000564353 RD3LP0DJH9 198 aa11.75□□□□□ -0.53
CLK3-215ENST00000564353 RGS19P49795 217 aa11.75□□□□□ -0.53
CLK3-215ENST00000564353 SUCLG1P53597 346 aaKnown RBP11.75□□□□□ -0.53
CLK3-215ENST00000564353 TAS2R31P59538 309 aa11.75□□□□□ -0.53
CLK3-215ENST00000564353 RIPPLY1Q0D2K3 151 aa11.75□□□□□ -0.53
CLK3-215ENST00000564353 TMEM123Q8N131 208 aa11.75□□□□□ -0.53
CLK3-215ENST00000564353 AK3Q9UIJ7 227 aa11.75□□□□□ -0.53
CLK3-215ENST00000564353 SPENQ96T58 3664 aaKnown RBP11.75□□□□□ -0.53
CLK3-215ENST00000564353 TMEM218A2RU14 115 aa11.75□□□□□ -0.53
CLK3-215ENST00000564353 GATCO43716 136 aaKnown RBP11.75□□□□□ -0.53
CLK3-215ENST00000564353 SNAPC5O75971 98 aa11.75□□□□□ -0.53
CLK3-215ENST00000564353 SCGNO76038 276 aa11.75□□□□□ -0.53
CLK3-215ENST00000564353 RPS2P15880 293 aaKnown RBP11.75□□□□□ -0.53
CLK3-215ENST00000564353 ZNF32P17041 273 aa11.75□□□□□ -0.53
CLK3-215ENST00000564353 CCL1P22362 96 aa11.75□□□□□ -0.53
CLK3-215ENST00000564353 FAHD2BQ6P2I3 314 aaPredicted RBP11.75□□□□□ -0.53
CLK3-215ENST00000564353 ETV3LQ6ZN32 361 aa11.75□□□□□ -0.53
CLK3-215ENST00000564353 LDLRAD3Q86YD5 345 aa11.75□□□□□ -0.53
CLK3-215ENST00000564353 MAML2Q8IZL2 1156 aaPredicted RBP11.75□□□□□ -0.53
CLK3-215ENST00000564353 OR11L1Q8NGX0 322 aa11.75□□□□□ -0.53
CLK3-215ENST00000564353 SSC4DQ8WTU2 575 aa11.75□□□□□ -0.53
CLK3-215ENST00000564353 ABHD3Q8WU67 409 aa11.75□□□□□ -0.53
CLK3-215ENST00000564353 FAHD2AQ96GK7 314 aa11.75□□□□□ -0.53
CLK3-215ENST00000564353 SULT4A1Q9BR01 284 aa11.75□□□□□ -0.53
CLK3-215ENST00000564353 NMES1Q9C002 83 aa11.75□□□□□ -0.53
CLK3-215ENST00000564353 CHST5Q9GZS9 411 aa11.75□□□□□ -0.53
CLK3-215ENST00000564353 SLC26A1Q9H2B4 701 aa11.75□□□□□ -0.53
CLK3-215ENST00000564353 MLXQ9UH92 298 aa11.75□□□□□ -0.53
CLK3-215ENST00000564353 C14orf166Q9Y224 244 aaKnown RBP11.75□□□□□ -0.53
CLK3-215ENST00000564353 LAMA5O15230 3695 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 CCDC163A0A0D9SF12 145 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 A0A1B0GW55 424 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms