RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 INSL5Q9Y5Q6 135 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 SIPA1L1O43166 1804 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 MAP2P11137 1827 aaKnown RBP4.37□□□□□ -1.71
VPS35-205ENST00000563984 TROQ12816 1431 aaPredicted RBP4.37□□□□□ -1.71
VPS35-205ENST00000563984 SYCP2Q9BX26 1530 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 IQGAP2Q13576 1575 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 SAMD9Q5K651 1589 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 LRRIQ1Q96JM4 1722 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 TRBV9A0A0B4J1U6 114 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 A0A0B4J2E0 115 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 TRBV4-1A0A0J9YWV2 114 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 ZNF816-ZNF321PA0A0X1KG74 233 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 TMEM269A0A1B0GVZ9 245 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 A0A1B0GX12 115 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 TMEM189A5PLL7 270 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 IFITM5A6NNB3 132 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 NPIPB5A8MRT5 1133 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 CHEK1O14757 476 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 SPRY3O43610 288 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 OR2T1O43869 369 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 ZG16O60844 167 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 ATP6AP2O75787 350 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 CLIC3O95833 236 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 EDN1P05305 212 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 DBIP07108 87 aaKnown RBP4.36□□□□□ -1.71
VPS35-205ENST00000563984 OR5AC1P0C628 307 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 ESDP10768 282 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 GP9P14770 177 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 SPNP16150 400 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 ZNF17P17021 662 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 ZNF43P17038 809 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 SDC1P18827 310 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 GGT1P19440 569 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 USF1P22415 310 aaPredicted RBP4.36□□□□□ -1.71
VPS35-205ENST00000563984 CDKN2BP42772 138 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 GLP1RP43220 463 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 GSK3BP49841 420 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 RAB8AP61006 207 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 NCS1P62166 190 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 RPS15AP62244 130 aaKnown RBP4.36□□□□□ -1.71
VPS35-205ENST00000563984 SNRPD2P62316 118 aaKnown RBP4.36□□□□□ -1.71
VPS35-205ENST00000563984 CDK5Q00535 292 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 LTBQ06643 244 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 BCL2L1Q07817 233 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 CDKN3Q16667 212 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 HIST3H3Q16695 136 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 TCTN1Q2MV58 587 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 SOHLH1Q5JUK2 328 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 ACTL10Q5JWF8 245 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 TPTE2P1Q5T6R2 138 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 HIST2H2AA3Q6FI13 130 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 GJB7Q6PEY0 223 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 Q6ZSR9 355 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 LINC00336Q6ZUF6 198 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 ACOT1Q86TX2 421 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 PIGZQ86VD9 579 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 DND1Q8IYX4 353 aaKnown RBP4.36□□□□□ -1.71
VPS35-205ENST00000563984 MUC20Q8N307 709 aaPredicted RBP4.36□□□□□ -1.71
VPS35-205ENST00000563984 MUC15Q8N387 334 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 MS4A15Q8N5U1 240 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 PRR26Q8N8Z3 221 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 GPR32P1Q8NGA4 272 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 OR4S1Q8NGB4 309 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 OR5AU1Q8NGC0 362 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 OR10D4PQ8NGN7 298 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 OR1F12Q8NHA8 337 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 FAM151AQ8WW52 585 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 DCUN1D4Q92564 292 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 RAB39BQ96DA2 213 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 RBP7Q96R05 134 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 GPER1Q99527 375 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 HSPB9Q9BQS6 159 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 CABLES2Q9BTV7 478 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 EFCAB11Q9BUY7 163 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 OR2J1Q9GZK6 312 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 VN1R1Q9GZP7 353 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 HEXA-AS1Q9H8Q6 139 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 LYRM2Q9NU23 88 aaPredicted RBP4.36□□□□□ -1.71
VPS35-205ENST00000563984 FBXL12Q9NXK8 326 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 NUFIP1Q9UHK0 495 aaKnown RBP4.36□□□□□ -1.71
VPS35-205ENST00000563984 TRAPPC4Q9Y296 219 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 CARHSP1Q9Y2V2 147 aaKnown RBP4.36□□□□□ -1.71
VPS35-205ENST00000563984 OR51B2Q9Y5P1 312 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 SPIN1Q9Y657 262 aaPredicted RBP4.36□□□□□ -1.71
VPS35-205ENST00000563984 WSB1Q9Y6I7 421 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 TCHHQ07283 1943 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 MYH2Q9UKX2 1941 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 ARHGAP23Q9P227 1491 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 PLXNC1O60486 1568 aa4.36□□□□□ -1.71
VPS35-205ENST00000563984 BIVM-ERCC5R4GMW8 1640 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 MYH7BA7E2Y1 1941 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 TRAV38-1A0A0B4J264 116 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 A0A0G2JNG1 304 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 GLYATL1P3A0A0U1RQE8 302 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 IQCMA0A1B0GVH7 501 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 A0A1W2PRE2 83 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 LRP5LA4QPB2 252 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 OR5H15A6NDH6 313 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 ANKUB1A6NFN9 424 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 OR5H1A6NKK0 313 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms