RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 DEDDO75618 318 aa11.57□□□□□ -0.56
CLN3-210ENST00000563874 TSPAN15O95858 294 aa11.57□□□□□ -0.56
CLN3-210ENST00000563874 ZNF806P0C7X5 589 aa11.57□□□□□ -0.56
CLN3-210ENST00000563874 SUMO3P55854 103 aaPredicted RBP11.57□□□□□ -0.56
CLN3-210ENST00000563874 ECH1Q13011 328 aa11.57□□□□□ -0.56
CLN3-210ENST00000563874 KRBOX4Q5JUW0 171 aa11.57□□□□□ -0.56
CLN3-210ENST00000563874 OGFOD3Q6PK18 319 aa11.57□□□□□ -0.56
CLN3-210ENST00000563874 SGPP2Q8IWX5 399 aa11.57□□□□□ -0.56
CLN3-210ENST00000563874 SKA3Q8IX90 412 aa11.57□□□□□ -0.56
CLN3-210ENST00000563874 OR9K2Q8NGE7 335 aa11.57□□□□□ -0.56
CLN3-210ENST00000563874 DYRK2Q92630 601 aa11.57□□□□□ -0.56
CLN3-210ENST00000563874 HIST1H2BAQ96A08 127 aa11.57□□□□□ -0.56
CLN3-210ENST00000563874 PARP11Q9NR21 331 aa11.57□□□□□ -0.56
CLN3-210ENST00000563874 PIGLQ9Y2B2 252 aa11.57□□□□□ -0.56
CLN3-210ENST00000563874 IGHV3-15A0A0B4J1V0 119 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 A6NLC8 198 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 FOXI3A8MTJ6 420 aaPredicted RBP11.56□□□□□ -0.56
CLN3-210ENST00000563874 M0R036 132 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 TMEM225BP0DP42 221 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 ZNF44P15621 663 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 CCL1P22362 96 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.56□□□□□ -0.56
CLN3-210ENST00000563874 C20orf196Q8IYI0 205 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 RHBDD1Q8TEB9 315 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 REEP6Q96HR9 211 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 COL5A1P20908 1838 aaPredicted RBP11.56□□□□□ -0.56
CLN3-210ENST00000563874 ADAMTS9Q9P2N4 1935 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 FAM221AA4D161 298 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 MSTNO14793 375 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 JTBO76095 146 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 PTAFRP25105 342 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 FXYD4P59646 89 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 HGFACQ04756 655 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 AWAT1Q58HT5 328 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 BEND4Q6ZU67 534 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 OR6X1Q8NH79 312 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 FAAP24Q9BTP7 215 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 EIF5A2Q9GZV4 153 aaKnown RBP11.56□□□□□ -0.56
CLN3-210ENST00000563874 C1orf196B1AJZ1 125 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 SGCEO43556 437 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 IFNA21P01568 189 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 IFNA4P05014 189 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 PTGDSP41222 190 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 ASCL1P50553 236 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 TAF9Q16594 264 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 BCL2L14Q9BZR8 327 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.56□□□□□ -0.56
CLN3-210ENST00000563874 PADI1Q9ULC6 663 aa11.56□□□□□ -0.56
CLN3-210ENST00000563874 SERPINE3A8MV23 424 aa11.55□□□□□ -0.56
CLN3-210ENST00000563874 PIAS2O75928 621 aa11.55□□□□□ -0.56
CLN3-210ENST00000563874 PRF1P14222 555 aa11.55□□□□□ -0.56
CLN3-210ENST00000563874 PIGPP57054 158 aa11.55□□□□□ -0.56
CLN3-210ENST00000563874 S100A12P80511 92 aa11.55□□□□□ -0.56
CLN3-210ENST00000563874 FAM189A2Q15884 450 aa11.55□□□□□ -0.56
CLN3-210ENST00000563874 EIF2S3LQ2VIR3 472 aaKnown RBP11.55□□□□□ -0.56
CLN3-210ENST00000563874 PHYHD1Q5SRE7 291 aa11.55□□□□□ -0.56
CLN3-210ENST00000563874 SYT13Q7L8C5 426 aa11.55□□□□□ -0.56
CLN3-210ENST00000563874 PPP1R3BQ86XI6 285 aa11.55□□□□□ -0.56
CLN3-210ENST00000563874 SPACA1Q9HBV2 294 aa11.55□□□□□ -0.56
CLN3-210ENST00000563874 GPR173Q9NS66 373 aa11.55□□□□□ -0.56
CLN3-210ENST00000563874 PISDQ9UG56 409 aa11.55□□□□□ -0.56
CLN3-210ENST00000563874 SHANK1Q9Y566 2161 aa11.55□□□□□ -0.56
CLN3-210ENST00000563874 hCG_1809904A0A1W2PP81 198 aa11.55□□□□□ -0.56
CLN3-210ENST00000563874 A0A1W2PPH5 198 aa11.55□□□□□ -0.56
CLN3-210ENST00000563874 A0A1W2PR64 198 aa11.55□□□□□ -0.56
CLN3-210ENST00000563874 A0A1W2PRV1 198 aa11.55□□□□□ -0.56
CLN3-210ENST00000563874 SPRY1O43609 319 aaPredicted RBP11.55□□□□□ -0.56
CLN3-210ENST00000563874 MBPP02686 304 aaPredicted RBP11.55□□□□□ -0.56
CLN3-210ENST00000563874 OR5H8P0DN80 308 aa11.55□□□□□ -0.56
CLN3-210ENST00000563874 GRB2P62993 217 aaKnown RBP11.55□□□□□ -0.56
CLN3-210ENST00000563874 NKAIN1Q4KMZ8 207 aa11.55□□□□□ -0.56
CLN3-210ENST00000563874 PHLDA2Q53GA4 152 aa11.55□□□□□ -0.56
CLN3-210ENST00000563874 OXGR1Q96P68 337 aa11.55□□□□□ -0.56
CLN3-210ENST00000563874 RSRP1Q9BUV0 290 aa11.55□□□□□ -0.56
CLN3-210ENST00000563874 SH3BGRL3Q9H299 93 aa11.55□□□□□ -0.56
CLN3-210ENST00000563874 NXT1Q9UKK6 140 aaKnown RBP11.55□□□□□ -0.56
CLN3-210ENST00000563874 TIMM10BQ9Y5J6 103 aa11.55□□□□□ -0.56
CLN3-210ENST00000563874 C7orf77A4D0Y5 90 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 ZNF850A8MQ14 1090 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 LINC00587B1AMM8 73 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 ARG1P05089 322 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 THBS4P35443 961 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 GUCA1AP43080 201 aaPredicted RBP11.54□□□□□ -0.56
CLN3-210ENST00000563874 LYZL2Q7Z4W2 148 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 STX12Q86Y82 276 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 HSD17B11Q8NBQ5 300 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 OR2AE1Q8NHA4 323 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 RGCCQ9H4X1 137 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 WFDC1Q9HC57 220 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 DHRS3O75911 302 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 OR5AC1P0C628 307 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 PNLIPP16233 465 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 SURF2Q15527 256 aaPredicted RBP11.54□□□□□ -0.56
CLN3-210ENST00000563874 RPUSD3Q6P087 351 aaKnown RBP11.54□□□□□ -0.56
CLN3-210ENST00000563874 C15orf54Q8N8G6 183 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 SLC25A43Q8WUT9 341 aaPredicted RBP11.54□□□□□ -0.56
CLN3-210ENST00000563874 WDR77Q9BQA1 342 aaPredicted RBP11.54□□□□□ -0.56
CLN3-210ENST00000563874 PIGQQ9BRB3 760 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 RBM24Q9BX46 236 aaKnown RBP11.54□□□□□ -0.56
CLN3-210ENST00000563874 WNT5BQ9H1J7 359 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms