RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 LUZP4Q9P127 313 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 PITPNC1Q9UKF7 332 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 BLACEA4D250 179 aa11.73□□□□□ -0.53
CLK3-206ENST00000562078 K7EPK0 472 aa11.73□□□□□ -0.53
CLK3-206ENST00000562078 RPL4P36578 427 aaKnown RBP11.73□□□□□ -0.53
CLK3-206ENST00000562078 ACAA2P42765 397 aaKnown RBP11.73□□□□□ -0.53
CLK3-206ENST00000562078 RPL29P47914 159 aaKnown RBP11.73□□□□□ -0.53
CLK3-206ENST00000562078 ERVFC1-1P60608 527 aa11.73□□□□□ -0.53
CLK3-206ENST00000562078 PAX5Q02548 391 aa11.73□□□□□ -0.53
CLK3-206ENST00000562078 LPAL2Q16609 132 aa11.73□□□□□ -0.53
CLK3-206ENST00000562078 LINC01590Q5TEZ4 76 aa11.73□□□□□ -0.53
CLK3-206ENST00000562078 FAM71E2Q8N5Q1 922 aa11.73□□□□□ -0.53
CLK3-206ENST00000562078 RNASE8Q8TDE3 154 aaKnown RBP11.73□□□□□ -0.53
CLK3-206ENST00000562078 ERGIC1Q969X5 290 aa11.73□□□□□ -0.53
CLK3-206ENST00000562078 FAAP24Q9BTP7 215 aa11.73□□□□□ -0.53
CLK3-206ENST00000562078 ALG12Q9BV10 488 aa11.73□□□□□ -0.53
CLK3-206ENST00000562078 COMMD4Q9H0A8 199 aa11.73□□□□□ -0.53
CLK3-206ENST00000562078 MRPS18BQ9Y676 258 aaKnown RBP11.73□□□□□ -0.53
CLK3-206ENST00000562078 ALPK2Q86TB3 2170 aa11.73□□□□□ -0.53
CLK3-206ENST00000562078 A0A087WWC5 75 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 CDRT15L2A8MXV6 281 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 TMEM150CB9EJG8 249 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 TGOLN2O43493 480 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 DFFBO76075 338 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 PET100P0DJ07 73 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 MYF5P13349 255 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 ZNF708P17019 499 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 EPHA8P29322 1005 aaPredicted RBP11.72□□□□□ -0.53
CLK3-206ENST00000562078 OR1D4P47884 311 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 SHBQ15464 509 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 TMEM128Q5BJH2 165 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 ALG10BQ5I7T1 473 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 LRP11Q86VZ4 500 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 PLPP5Q8NEB5 264 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.72□□□□□ -0.53
CLK3-206ENST00000562078 CMKLR1Q99788 373 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 OR11A1Q9GZK7 315 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 SH3BGRL3Q9H299 93 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 ZNF107Q9UII5 783 aaPredicted RBP11.72□□□□□ -0.53
CLK3-206ENST00000562078 FOXD3Q9UJU5 478 aaPredicted RBP11.72□□□□□ -0.53
CLK3-206ENST00000562078 HSD17B6O14756 317 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 MBPP02686 304 aaPredicted RBP11.72□□□□□ -0.53
CLK3-206ENST00000562078 GAPDHP04406 335 aaKnown RBP11.72□□□□□ -0.53
CLK3-206ENST00000562078 IFNA6P05013 189 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 CFPP27918 469 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 FUT7Q11130 342 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 HLA-BQ31612 363 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 HIKESHIQ53FT3 197 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 RTN4RL2Q86UN3 420 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 BCORP1Q8N888 145 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 C2orf50Q96LR7 162 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 C5orf66Q9H5L9 145 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 PLEKHA2Q9HB19 425 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 RCL1Q9Y2P8 373 aaKnown RBP11.72□□□□□ -0.53
CLK3-206ENST00000562078 TTC28Q96AY4 2481 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 PCNX3Q9H6A9 2034 aa11.72□□□□□ -0.53
CLK3-206ENST00000562078 IGHV1OR21-1A0A087WYE8 117 aa11.71□□□□□ -0.53
CLK3-206ENST00000562078 DHRS7CA6NNS2 312 aa11.71□□□□□ -0.53
CLK3-206ENST00000562078 C17orf105B2RV13 164 aa11.71□□□□□ -0.53
CLK3-206ENST00000562078 PATE3B3GLJ2 98 aa11.71□□□□□ -0.53
CLK3-206ENST00000562078 H0YIG0 161 aa11.71□□□□□ -0.53
CLK3-206ENST00000562078 CCL20P78556 96 aa11.71□□□□□ -0.53
CLK3-206ENST00000562078 IL15RAQ13261 267 aa11.71□□□□□ -0.53
CLK3-206ENST00000562078 ZNF141Q15928 474 aa11.71□□□□□ -0.53
CLK3-206ENST00000562078 OTPQ5XKR4 325 aa11.71□□□□□ -0.53
CLK3-206ENST00000562078 KIRREL2Q6UWL6 708 aa11.71□□□□□ -0.53
CLK3-206ENST00000562078 OR4C3Q8NH37 302 aa11.71□□□□□ -0.53
CLK3-206ENST00000562078 PPP1R14AQ96A00 147 aa11.71□□□□□ -0.53
CLK3-206ENST00000562078 TRIM2Q9C040 744 aa11.71□□□□□ -0.53
CLK3-206ENST00000562078 LPAR2Q9HBW0 351 aa11.71□□□□□ -0.53
CLK3-206ENST00000562078 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.71□□□□□ -0.53
CLK3-206ENST00000562078 DCDC2BA2VCK2 349 aa11.71□□□□□ -0.53
CLK3-206ENST00000562078 NUDT21O43809 227 aaKnown RBP11.71□□□□□ -0.53
CLK3-206ENST00000562078 CRTAPO75718 401 aaPredicted RBP11.71□□□□□ -0.53
CLK3-206ENST00000562078 NDUFB2O95178 105 aa11.71□□□□□ -0.53
CLK3-206ENST00000562078 SFT2D2O95562 160 aa11.71□□□□□ -0.53
CLK3-206ENST00000562078 CLPSP04118 112 aa11.71□□□□□ -0.53
CLK3-206ENST00000562078 SP9P0CG40 484 aa11.71□□□□□ -0.53
CLK3-206ENST00000562078 SELEP16581 610 aa11.71□□□□□ -0.53
CLK3-206ENST00000562078 LMO1P25800 156 aa11.71□□□□□ -0.53
CLK3-206ENST00000562078 GLIPR1P48060 266 aa11.71□□□□□ -0.53
CLK3-206ENST00000562078 ARL4DP49703 201 aa11.71□□□□□ -0.53
CLK3-206ENST00000562078 SLC25A1P53007 311 aa11.71□□□□□ -0.53
CLK3-206ENST00000562078 SUPT4H1P63272 117 aaKnown RBP11.71□□□□□ -0.53
CLK3-206ENST00000562078 EGR3Q06889 387 aa11.71□□□□□ -0.53
CLK3-206ENST00000562078 NKAIN1Q4KMZ8 207 aa11.71□□□□□ -0.53
CLK3-206ENST00000562078 ZNF321PQ8N8H1 164 aa11.71□□□□□ -0.53
CLK3-206ENST00000562078 PNO1Q9NRX1 252 aaKnown RBP11.71□□□□□ -0.53
CLK3-206ENST00000562078 TMEM212A6NML5 194 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 SIAH2O43255 324 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 CSTAP01040 98 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 GCGP01275 180 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 GLB1P16278 677 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 FUT3P21217 361 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 TAS2R31P59538 309 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 CFHR1Q03591 330 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 TRIM61Q5EBN2 209 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 WDR38Q5JTN6 314 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 OPN5Q6U736 354 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 TIPARPQ7Z3E1 657 aaKnown RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms