RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 ACTC1P68032 377 aa12.91□□□□□ -0.34
VPS39-203ENST00000561797 ACTA1P68133 377 aa12.91□□□□□ -0.34
VPS39-203ENST00000561797 CDONQ4KMG0 1287 aa12.91□□□□□ -0.34
VPS39-203ENST00000561797 ACP7Q6ZNF0 438 aa12.91□□□□□ -0.34
VPS39-203ENST00000561797 ENTHD1Q8IYW4 607 aa12.91□□□□□ -0.34
VPS39-203ENST00000561797 POC1AQ8NBT0 407 aa12.91□□□□□ -0.34
VPS39-203ENST00000561797 ZNRF1Q8ND25 227 aa12.91□□□□□ -0.34
VPS39-203ENST00000561797 TMEM185AQ8NFB2 350 aa12.91□□□□□ -0.34
VPS39-203ENST00000561797 GATAD2BQ8WXI9 593 aa12.91□□□□□ -0.34
VPS39-203ENST00000561797 SLC25A28Q96A46 364 aa12.91□□□□□ -0.34
VPS39-203ENST00000561797 TNFRSF19Q9NS68 423 aa12.91□□□□□ -0.34
VPS39-203ENST00000561797 RASL12Q9NYN1 266 aa12.91□□□□□ -0.34
VPS39-203ENST00000561797 MAB21L2Q9Y586 359 aa12.91□□□□□ -0.34
VPS39-203ENST00000561797 KPTNQ9Y664 436 aa12.91□□□□□ -0.34
VPS39-203ENST00000561797 DSCAML1Q8TD84 2053 aa12.91□□□□□ -0.34
VPS39-203ENST00000561797 IGHV1-69DA0A0B4J2H0 117 aa12.9□□□□□ -0.34
VPS39-203ENST00000561797 LOC107986453A0A1B0GWG9 222 aa12.9□□□□□ -0.34
VPS39-203ENST00000561797 RFPL4AA6NLU0 287 aa12.9□□□□□ -0.34
VPS39-203ENST00000561797 RFPL4AL1F8VTS6 287 aa12.9□□□□□ -0.34
VPS39-203ENST00000561797 J3QLW9 94 aa12.9□□□□□ -0.34
VPS39-203ENST00000561797 J3QRE1 110 aa12.9□□□□□ -0.34
VPS39-203ENST00000561797 HOXA3O43365 443 aaPredicted RBP12.9□□□□□ -0.34
VPS39-203ENST00000561797 IGHV1-69P01742 117 aa12.9□□□□□ -0.34
VPS39-203ENST00000561797 PGA5P0DJD9 388 aa12.9□□□□□ -0.34
VPS39-203ENST00000561797 ZNF19P17023 458 aa12.9□□□□□ -0.34
VPS39-203ENST00000561797 GABRB1P18505 474 aa12.9□□□□□ -0.34
VPS39-203ENST00000561797 CAPZA1P52907 286 aa12.9□□□□□ -0.34
VPS39-203ENST00000561797 PRB3Q04118 309 aaPredicted RBP12.9□□□□□ -0.34
VPS39-203ENST00000561797 UBE2V2Q15819 145 aa12.9□□□□□ -0.34
VPS39-203ENST00000561797 SMIM21Q3B7S5 101 aa12.9□□□□□ -0.34
VPS39-203ENST00000561797 KCTD20Q7Z5Y7 419 aa12.9□□□□□ -0.34
VPS39-203ENST00000561797 CALHM1Q8IU99 346 aa12.9□□□□□ -0.34
VPS39-203ENST00000561797 CMTM4Q8IZR5 234 aa12.9□□□□□ -0.34
VPS39-203ENST00000561797 ACBD7Q8N6N7 88 aa12.9□□□□□ -0.34
VPS39-203ENST00000561797 C3orf56Q8N813 242 aa12.9□□□□□ -0.34
VPS39-203ENST00000561797 OR2G2Q8NGZ5 317 aa12.9□□□□□ -0.34
VPS39-203ENST00000561797 STMN2Q93045 179 aa12.9□□□□□ -0.34
VPS39-203ENST00000561797 RNF166Q96A37 237 aaPredicted RBP12.9□□□□□ -0.34
VPS39-203ENST00000561797 LGALS12Q96DT0 336 aa12.9□□□□□ -0.34
VPS39-203ENST00000561797 ZMAT3Q9HA38 289 aaKnown RBP12.9□□□□□ -0.34
VPS39-203ENST00000561797 AMBNQ9NP70 447 aa12.9□□□□□ -0.34
VPS39-203ENST00000561797 SIRT7Q9NRC8 400 aa12.9□□□□□ -0.34
VPS39-203ENST00000561797 FAM118AQ9NWS6 357 aa12.9□□□□□ -0.34
VPS39-203ENST00000561797 ZNF222Q9UK12 451 aa12.9□□□□□ -0.34
VPS39-203ENST00000561797 SLC7A11Q9UPY5 501 aa12.9□□□□□ -0.34
VPS39-203ENST00000561797 EXOGQ9Y2C4 368 aaKnown RBP12.9□□□□□ -0.34
VPS39-203ENST00000561797 POLDIP2Q9Y2S7 368 aa12.9□□□□□ -0.34
VPS39-203ENST00000561797 PCDHGB1Q9Y5G3 927 aa12.9□□□□□ -0.34
VPS39-203ENST00000561797 LOC100130705A0A1B0GUX0 176 aa12.89□□□□□ -0.35
VPS39-203ENST00000561797 A0A1W2PQ09 198 aa12.89□□□□□ -0.35
VPS39-203ENST00000561797 SLC16A6O15403 523 aa12.89□□□□□ -0.35
VPS39-203ENST00000561797 INMTO95050 263 aa12.89□□□□□ -0.35
VPS39-203ENST00000561797 NXPH2O95156 264 aa12.89□□□□□ -0.35
VPS39-203ENST00000561797 RNASE1P07998 156 aaKnown RBP12.89□□□□□ -0.35
VPS39-203ENST00000561797 HTR1AP08908 422 aa12.89□□□□□ -0.35
VPS39-203ENST00000561797 UBCP0CG48 685 aaKnown RBP12.89□□□□□ -0.35
VPS39-203ENST00000561797 HKR1P10072 659 aa12.89□□□□□ -0.35
VPS39-203ENST00000561797 DBTP11182 482 aaKnown RBP12.89□□□□□ -0.35
VPS39-203ENST00000561797 CEBPDP49716 269 aaPredicted RBP12.89□□□□□ -0.35
VPS39-203ENST00000561797 COMPP49747 757 aaPredicted RBP12.89□□□□□ -0.35
VPS39-203ENST00000561797 DLX1P56177 255 aa12.89□□□□□ -0.35
VPS39-203ENST00000561797 CAV3P56539 151 aa12.89□□□□□ -0.35
VPS39-203ENST00000561797 ZNF91Q05481 1191 aa12.89□□□□□ -0.35
VPS39-203ENST00000561797 AWAT1Q58HT5 328 aa12.89□□□□□ -0.35
VPS39-203ENST00000561797 LHFPL3Q86UP9 236 aa12.89□□□□□ -0.35
VPS39-203ENST00000561797 CD177Q8N6Q3 437 aa12.89□□□□□ -0.35
VPS39-203ENST00000561797 C8orf46Q8TAG6 207 aa12.89□□□□□ -0.35
VPS39-203ENST00000561797 TAF15Q92804 592 aaKnown RBP eCLIP12.89□□□□□ -0.35
VPS39-203ENST00000561797 FRRS1LQ9P0K9 344 aa12.89□□□□□ -0.35
VPS39-203ENST00000561797 OR14J1Q9UGF5 321 aa12.89□□□□□ -0.35
VPS39-203ENST00000561797 A0A1W2PRD5 423 aa12.88□□□□□ -0.35
VPS39-203ENST00000561797 A0A1W2PRF3 423 aa12.88□□□□□ -0.35
VPS39-203ENST00000561797 A0A1W2PRM7 423 aa12.88□□□□□ -0.35
VPS39-203ENST00000561797 CLDN34H7C241 214 aa12.88□□□□□ -0.35
VPS39-203ENST00000561797 MPZL2O60487 215 aa12.88□□□□□ -0.35
VPS39-203ENST00000561797 NOS1APO75052 506 aaPredicted RBP12.88□□□□□ -0.35
VPS39-203ENST00000561797 GATBO75879 557 aaKnown RBP12.88□□□□□ -0.35
VPS39-203ENST00000561797 SERPINA3P01011 423 aa12.88□□□□□ -0.35
VPS39-203ENST00000561797 PRDX2P32119 198 aa12.88□□□□□ -0.35
VPS39-203ENST00000561797 NANOS3P60323 173 aaKnown RBP12.88□□□□□ -0.35
VPS39-203ENST00000561797 TMEM244Q5VVB8 128 aa12.88□□□□□ -0.35
VPS39-203ENST00000561797 Q6YL49 198 aa12.88□□□□□ -0.35
VPS39-203ENST00000561797 FAM185AQ8N0U4 392 aa12.88□□□□□ -0.35
VPS39-203ENST00000561797 KIR3DL3Q8N743 410 aa12.88□□□□□ -0.35
VPS39-203ENST00000561797 Q8N7P7 452 aa12.88□□□□□ -0.35
VPS39-203ENST00000561797 CCDC54Q8NEL0 328 aa12.88□□□□□ -0.35
VPS39-203ENST00000561797 RHOXF1Q8NHV9 184 aa12.88□□□□□ -0.35
VPS39-203ENST00000561797 SDSLQ96GA7 329 aa12.88□□□□□ -0.35
VPS39-203ENST00000561797 C4orf36Q96KX1 117 aa12.88□□□□□ -0.35
VPS39-203ENST00000561797 DMRTB1Q96MA1 342 aa12.88□□□□□ -0.35
VPS39-203ENST00000561797 Q96MT0 163 aa12.88□□□□□ -0.35
VPS39-203ENST00000561797 NRIP2Q9BQI9 281 aa12.88□□□□□ -0.35
VPS39-203ENST00000561797 PRDM13Q9H4Q3 707 aa12.88□□□□□ -0.35
VPS39-203ENST00000561797 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.88□□□□□ -0.35
VPS39-203ENST00000561797 MYRFQ9Y2G1 1151 aa12.88□□□□□ -0.35
VPS39-203ENST00000561797 IGKV1-27A0A075B6S5 117 aa12.87□□□□□ -0.35
VPS39-203ENST00000561797 A0A0U1RQK1 487 aa12.87□□□□□ -0.35
VPS39-203ENST00000561797 MPZP25189 248 aa12.87□□□□□ -0.35
VPS39-203ENST00000561797 FUT6P51993 359 aa12.87□□□□□ -0.35
VPS39-203ENST00000561797 FOXL1Q12952 345 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms