RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 DYNC1I2Q13409 638 aaKnown RBP10.03□□□□□ -0.8
LDLR-212ENST00000560467 OR8G1Q15617 311 aa10.03□□□□□ -0.8
LDLR-212ENST00000560467 NKPD1Q17RQ9 610 aa10.03□□□□□ -0.8
LDLR-212ENST00000560467 CEACAM21Q3KPI0 293 aa10.03□□□□□ -0.8
LDLR-212ENST00000560467 LINC00299Q6ZSB3 139 aa10.03□□□□□ -0.8
LDLR-212ENST00000560467 LHFPL2Q6ZUX7 228 aa10.03□□□□□ -0.8
LDLR-212ENST00000560467 MYPOPQ86VE0 399 aaPredicted RBP10.03□□□□□ -0.8
LDLR-212ENST00000560467 BHLHE23Q8NDY6 225 aa10.03□□□□□ -0.8
LDLR-212ENST00000560467 DNAAF1Q8NEP3 725 aa10.03□□□□□ -0.8
LDLR-212ENST00000560467 OR5A2Q8NGI9 324 aa10.03□□□□□ -0.8
LDLR-212ENST00000560467 MARS2Q96GW9 593 aaKnown RBP10.03□□□□□ -0.8
LDLR-212ENST00000560467 RTL8AQ9BWD3 113 aa10.03□□□□□ -0.8
LDLR-212ENST00000560467 PLK3Q9H4B4 646 aa10.03□□□□□ -0.8
LDLR-212ENST00000560467 GPR173Q9NS66 373 aa10.03□□□□□ -0.8
LDLR-212ENST00000560467 GHRLQ9UBU3 117 aa10.03□□□□□ -0.8
LDLR-212ENST00000560467 PURGQ9UJV8 347 aaKnown RBP10.03□□□□□ -0.8
LDLR-212ENST00000560467 RHBDD3Q9Y3P4 386 aa10.03□□□□□ -0.8
LDLR-212ENST00000560467 A0A075B6Q4 140 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 C5orf63A6NC05 138 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 OR5B21A6NL26 309 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 IQCF6A8MYZ5 107 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 NCR1O76036 304 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 CSF3P09919 207 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 CLEC2LP0C7M8 214 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 UBBP0CG47 229 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 TMEM225BP0DP42 221 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 ZNF250P15622 560 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 KITLGP21583 273 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 ACKR3P25106 362 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 AZGP1P25311 298 aaKnown RBP10.02□□□□□ -0.81
LDLR-212ENST00000560467 HTR2CP28335 458 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 THBS2P35442 1172 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 PSG7Q13046 419 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 RIN1Q13671 783 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 GPR176Q14439 515 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 FAM120AOSQ5T036 256 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 FAM166AQ6J272 317 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 LRRTM1Q86UE6 522 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 ZNF573Q86YE8 665 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 OR5AS1Q8N127 324 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 OR8G5Q8NG78 346 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 MSI2Q96DH6 328 aaKnown RBP10.02□□□□□ -0.81
LDLR-212ENST00000560467 RNF170Q96K19 258 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 METTL17Q9H7H0 456 aaPredicted RBP10.02□□□□□ -0.81
LDLR-212ENST00000560467 ZNF442Q9H7R0 627 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 ELL3Q9HB65 397 aaPredicted RBP10.02□□□□□ -0.81
LDLR-212ENST00000560467 CA10Q9NS85 328 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 COMMD3Q9UBI1 195 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 STEAP1Q9UHE8 339 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 KCNS2Q9ULS6 477 aa10.02□□□□□ -0.81
LDLR-212ENST00000560467 IGHV4-61A0A0C4DH41 118 aa10.01□□□□□ -0.81
LDLR-212ENST00000560467 LOC100289279A0A1B0GTE1 492 aa10.01□□□□□ -0.81
LDLR-212ENST00000560467 SMIM30A4D0T7 59 aa10.01□□□□□ -0.81
LDLR-212ENST00000560467 ZNF780AO75290 641 aaPredicted RBP10.01□□□□□ -0.81
LDLR-212ENST00000560467 IGHV3-13P01766 116 aa10.01□□□□□ -0.81
LDLR-212ENST00000560467 CALCBP10092 127 aa10.01□□□□□ -0.81
LDLR-212ENST00000560467 ARSBP15848 533 aa10.01□□□□□ -0.81
LDLR-212ENST00000560467 CA6P23280 308 aa10.01□□□□□ -0.81
LDLR-212ENST00000560467 SERPINF1P36955 418 aa10.01□□□□□ -0.81
LDLR-212ENST00000560467 GZMKP49863 264 aa10.01□□□□□ -0.81
LDLR-212ENST00000560467 SCAND1P57086 179 aa10.01□□□□□ -0.81
LDLR-212ENST00000560467 GNG3P63215 75 aa10.01□□□□□ -0.81
LDLR-212ENST00000560467 KISS1Q15726 138 aa10.01□□□□□ -0.81
LDLR-212ENST00000560467 CARTPTQ16568 116 aa10.01□□□□□ -0.81
LDLR-212ENST00000560467 SPANXN2Q5MJ10 180 aa10.01□□□□□ -0.81
LDLR-212ENST00000560467 HES5Q5TA89 166 aa10.01□□□□□ -0.81
LDLR-212ENST00000560467 TMEM42Q69YG0 159 aa10.01□□□□□ -0.81
LDLR-212ENST00000560467 MKXQ8IYA7 352 aa10.01□□□□□ -0.81
LDLR-212ENST00000560467 OR52N4Q8NGI2 321 aa10.01□□□□□ -0.81
LDLR-212ENST00000560467 NPRL2Q8WTW4 380 aa10.01□□□□□ -0.81
LDLR-212ENST00000560467 ORAI1Q96D31 301 aa10.01□□□□□ -0.81
LDLR-212ENST00000560467 DIRC2Q96SL1 478 aa10.01□□□□□ -0.81
LDLR-212ENST00000560467 SOX7Q9BT81 388 aa10.01□□□□□ -0.81
LDLR-212ENST00000560467 SLIRPQ9GZT3 109 aaKnown RBP10.01□□□□□ -0.81
LDLR-212ENST00000560467 CST11Q9H112 138 aa10.01□□□□□ -0.81
LDLR-212ENST00000560467 ZDHHC8Q9ULC8 765 aa10.01□□□□□ -0.81
LDLR-212ENST00000560467 ING4Q9UNL4 249 aa10.01□□□□□ -0.81
LDLR-212ENST00000560467 ETV7Q9Y603 341 aa10.01□□□□□ -0.81
LDLR-212ENST00000560467 METTL21EPA6NDL7 271 aa10□□□□□ -0.81
LDLR-212ENST00000560467 VWC2LB2RUY7 222 aa10□□□□□ -0.81
LDLR-212ENST00000560467 FAM25AB3EWG3 89 aa10□□□□□ -0.81
LDLR-212ENST00000560467 FAM25CB3EWG5 89 aa10□□□□□ -0.81
LDLR-212ENST00000560467 FAM25GB3EWG6 89 aa10□□□□□ -0.81
LDLR-212ENST00000560467 H3BUI4 141 aa10□□□□□ -0.81
LDLR-212ENST00000560467 SLC17A2O00624 439 aa10□□□□□ -0.81
LDLR-212ENST00000560467 KDM4BO94953 1096 aa10□□□□□ -0.81
LDLR-212ENST00000560467 CSTBP04080 98 aaKnown RBP10□□□□□ -0.81
LDLR-212ENST00000560467 OR4A8P0C604 315 aa10□□□□□ -0.81
LDLR-212ENST00000560467 APOBEC3AP31941 199 aaPredicted RBP10□□□□□ -0.81
LDLR-212ENST00000560467 NR4A2P43354 598 aa10□□□□□ -0.81
LDLR-212ENST00000560467 EVX1P49640 407 aa10□□□□□ -0.81
LDLR-212ENST00000560467 BMXP51813 675 aa10□□□□□ -0.81
LDLR-212ENST00000560467 CAV3P56539 151 aa10□□□□□ -0.81
LDLR-212ENST00000560467 OR10A3P58181 314 aa10□□□□□ -0.81
LDLR-212ENST00000560467 ERVS71-1P61550 626 aa10□□□□□ -0.81
LDLR-212ENST00000560467 RSU1Q15404 277 aa10□□□□□ -0.81
LDLR-212ENST00000560467 UBE2V2Q15819 145 aa10□□□□□ -0.81
LDLR-212ENST00000560467 AWAT2Q6E213 333 aa10□□□□□ -0.81
LDLR-212ENST00000560467 ZNF529Q6P280 563 aa10□□□□□ -0.81
LDLR-212ENST00000560467 ANGPTL5Q86XS5 388 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms