RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 WDR13Q9H1Z4 485 aa18.25■□□□□ 0.51
SNX1-210ENST00000560260 TMEM165Q9HC07 324 aa18.25■□□□□ 0.51
SNX1-210ENST00000560260 ZANQ9Y493 2812 aa18.24■□□□□ 0.51
SNX1-210ENST00000560260 PPIAL4EA0A075B759 164 aa18.24■□□□□ 0.51
SNX1-210ENST00000560260 IGHV3OR15-7A0A075B7D8 119 aa18.24■□□□□ 0.51
SNX1-210ENST00000560260 ISPDA4D126 451 aa18.24■□□□□ 0.51
SNX1-210ENST00000560260 PPIAL4DF5H284 164 aa18.24■□□□□ 0.51
SNX1-210ENST00000560260 SMAD7O15105 426 aaKnown RBP18.24■□□□□ 0.51
SNX1-210ENST00000560260 PPIAL4FP0DN26 164 aa18.24■□□□□ 0.51
SNX1-210ENST00000560260 TGFBR2P37173 567 aa18.24■□□□□ 0.51
SNX1-210ENST00000560260 GMFBP60983 142 aa18.24■□□□□ 0.51
SNX1-210ENST00000560260 CEACAM19Q7Z692 300 aa18.24■□□□□ 0.51
SNX1-210ENST00000560260 LRRC28Q86X40 367 aaPredicted RBP18.24■□□□□ 0.51
SNX1-210ENST00000560260 BATF2Q8N1L9 274 aa18.24■□□□□ 0.51
SNX1-210ENST00000560260 DEFB108BQ8NET1 73 aa18.24■□□□□ 0.51
SNX1-210ENST00000560260 OR52N4Q8NGI2 321 aa18.24■□□□□ 0.51
SNX1-210ENST00000560260 PKIBQ9C010 78 aa18.24■□□□□ 0.51
SNX1-210ENST00000560260 PPIAL4AQ9Y536 164 aa18.24■□□□□ 0.51
SNX1-210ENST00000560260 LGALS8O00214 317 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 CCRL2O00421 344 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 GABRPO00591 440 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 RGS9O75916 674 aaPredicted RBP18.23■□□□□ 0.51
SNX1-210ENST00000560260 HCKP08631 526 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 UCHL1P09936 223 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 PGA5P0DJD9 388 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 POU3F4P49335 361 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 ATP1B3P54709 279 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 MTCP1P56278 107 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 ZNF404Q494X3 552 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 SFRP4Q6FHJ7 346 aaPredicted RBP18.23■□□□□ 0.51
SNX1-210ENST00000560260 PEG10Q86TG7 708 aaKnown RBP18.23■□□□□ 0.51
SNX1-210ENST00000560260 POC1AQ8NBT0 407 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 OR5D18Q8NGL1 313 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 ACANP16112 2415 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 F8VVB4 439 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 F8VWA3 439 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 SPRY1O43609 319 aaPredicted RBP18.23■□□□□ 0.51
SNX1-210ENST00000560260 OCMP0CE72 109 aaPredicted RBP18.23■□□□□ 0.51
SNX1-210ENST00000560260 PSMA1P25786 263 aaKnown RBP18.23■□□□□ 0.51
SNX1-210ENST00000560260 MAPK3P27361 379 aaPredicted RBP18.23■□□□□ 0.51
SNX1-210ENST00000560260 MDH2P40926 338 aaKnown RBP18.23■□□□□ 0.51
SNX1-210ENST00000560260 ZP1P60852 638 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 LMO4P61968 165 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 PPP3R1P63098 170 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 IL24Q13007 206 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 TRAM1Q15629 374 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 TMEM155Q4W5P6 130 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 TEX36Q5VZQ5 186 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 CD200R1LQ6Q8B3 271 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 SLC25A26Q70HW3 274 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 FAM90A1Q86YD7 464 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 THRSPQ92748 146 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 SLAMF9Q96A28 289 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 NRIP2Q9BQI9 281 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 TMEM246Q9BRR3 403 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 MTCH1Q9NZJ7 389 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 FOXJ3Q9UPW0 622 aa18.23■□□□□ 0.51
SNX1-210ENST00000560260 IGKV1-12A0A0C4DH73 117 aa18.22■□□□□ 0.51
SNX1-210ENST00000560260 OOEPA6NGQ2 149 aa18.22■□□□□ 0.51
SNX1-210ENST00000560260 CEACAM18A8MTB9 384 aa18.22■□□□□ 0.51
SNX1-210ENST00000560260 FSTL3O95633 263 aa18.22■□□□□ 0.51
SNX1-210ENST00000560260 IGKV1D-12P01611 117 aa18.22■□□□□ 0.51
SNX1-210ENST00000560260 ADRA2CP18825 462 aa18.22■□□□□ 0.51
SNX1-210ENST00000560260 BDKRB2P30411 391 aa18.22■□□□□ 0.51
SNX1-210ENST00000560260 ERVK11-1P61568 191 aa18.22■□□□□ 0.51
SNX1-210ENST00000560260 KISS1Q15726 138 aa18.22■□□□□ 0.51
SNX1-210ENST00000560260 DDI2Q5TDH0 399 aa18.22■□□□□ 0.51
SNX1-210ENST00000560260 GAL3ST1Q99999 423 aa18.22■□□□□ 0.51
SNX1-210ENST00000560260 TMEM138Q9NPI0 162 aa18.22■□□□□ 0.51
SNX1-210ENST00000560260 POLDIP2Q9Y2S7 368 aa18.22■□□□□ 0.51
SNX1-210ENST00000560260 YLPM1P49750 1951 aaKnown RBP18.21■□□□□ 0.51
SNX1-210ENST00000560260 F5H0A9 414 aaPredicted RBP18.21■□□□□ 0.51
SNX1-210ENST00000560260 TNFRSF13BO14836 293 aaPredicted RBP18.21■□□□□ 0.51
SNX1-210ENST00000560260 ANGPTL7O43827 346 aa18.21■□□□□ 0.51
SNX1-210ENST00000560260 NOS1APO75052 506 aaPredicted RBP18.21■□□□□ 0.51
SNX1-210ENST00000560260 IGHV2-5P01817 119 aa18.21■□□□□ 0.51
SNX1-210ENST00000560260 TFF1P04155 84 aa18.21■□□□□ 0.51
SNX1-210ENST00000560260 MAS1P04201 325 aa18.21■□□□□ 0.51
SNX1-210ENST00000560260 ALDOBP05062 364 aa18.21■□□□□ 0.51
SNX1-210ENST00000560260 JUNBP17275 347 aaPredicted RBP18.21■□□□□ 0.51
SNX1-210ENST00000560260 KRTAP1-1Q07627 177 aa18.21■□□□□ 0.51
SNX1-210ENST00000560260 PDZK1IP1Q13113 114 aa18.21■□□□□ 0.51
SNX1-210ENST00000560260 HSD17B12Q53GQ0 312 aa18.21■□□□□ 0.51
SNX1-210ENST00000560260 LYPD2Q6UXB3 125 aa18.21■□□□□ 0.51
SNX1-210ENST00000560260 LRRTM1Q86UE6 522 aa18.21■□□□□ 0.51
SNX1-210ENST00000560260 LYPD6Q86Y78 171 aa18.21■□□□□ 0.51
SNX1-210ENST00000560260 ZNF671Q8TAW3 534 aa18.21■□□□□ 0.51
SNX1-210ENST00000560260 C18orf12Q96KH6 178 aa18.21■□□□□ 0.51
SNX1-210ENST00000560260 SNTG1Q9NSN8 517 aa18.21■□□□□ 0.51
SNX1-210ENST00000560260 CKLFQ9UBR5 152 aa18.21■□□□□ 0.51
SNX1-210ENST00000560260 ANK3Q12955 4377 aaKnown RBP18.2■□□□□ 0.5
SNX1-210ENST00000560260 GYPAP02724 150 aa18.2■□□□□ 0.5
SNX1-210ENST00000560260 CD99P14209 185 aa18.2■□□□□ 0.5
SNX1-210ENST00000560260 AMY2BP19961 511 aa18.2■□□□□ 0.5
SNX1-210ENST00000560260 GLRA1P23415 457 aa18.2■□□□□ 0.5
SNX1-210ENST00000560260 NPBWR2P48146 333 aa18.2■□□□□ 0.5
SNX1-210ENST00000560260 TMEM249Q2WGJ8 235 aa18.2■□□□□ 0.5
SNX1-210ENST00000560260 ZNF665Q9H7R5 613 aa18.2■□□□□ 0.5
SNX1-210ENST00000560260 NEK6Q9HC98 313 aa18.2■□□□□ 0.5
SNX1-210ENST00000560260 HES4Q9HCC6 221 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms