RNA–Protein interactions for RNA: ENST00000557703.5

SHMT2-234, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-234ENST00000557703 ZNF879B4DU55 563 aa11.47□□□□□ -0.57
SHMT2-234ENST00000557703 F5H0A9 414 aaPredicted RBP11.47□□□□□ -0.57
SHMT2-234ENST00000557703 SMAD7O15105 426 aaKnown RBP11.47□□□□□ -0.57
SHMT2-234ENST00000557703 TNFAIP8O95379 198 aa11.47□□□□□ -0.57
SHMT2-234ENST00000557703 PGA5P0DJD9 388 aa11.47□□□□□ -0.57
SHMT2-234ENST00000557703 IGHV4-31P0DP07 118 aa11.47□□□□□ -0.57
SHMT2-234ENST00000557703 CPEP16870 476 aa11.47□□□□□ -0.57
SHMT2-234ENST00000557703 GALP22466 123 aa11.47□□□□□ -0.57
SHMT2-234ENST00000557703 AZGP1P25311 298 aaKnown RBP11.47□□□□□ -0.57
SHMT2-234ENST00000557703 BMXP51813 675 aa11.47□□□□□ -0.57
SHMT2-234ENST00000557703 DVL1P1P54792 670 aaPredicted RBP11.47□□□□□ -0.57
SHMT2-234ENST00000557703 SMIM21Q3B7S5 101 aa11.47□□□□□ -0.57
SHMT2-234ENST00000557703 AVPI1Q5T686 147 aa11.47□□□□□ -0.57
SHMT2-234ENST00000557703 FAM166AQ6J272 317 aa11.47□□□□□ -0.57
SHMT2-234ENST00000557703 HAGHLQ6PII5 290 aaPredicted RBP11.47□□□□□ -0.57
SHMT2-234ENST00000557703 SLC36A1Q7Z2H8 476 aa11.47□□□□□ -0.57
SHMT2-234ENST00000557703 POC1AQ8NBT0 407 aa11.47□□□□□ -0.57
SHMT2-234ENST00000557703 OR10AC1Q8NH08 325 aa11.47□□□□□ -0.57
SHMT2-234ENST00000557703 RPL3LQ92901 407 aaKnown RBP11.47□□□□□ -0.57
SHMT2-234ENST00000557703 NEIL1Q96FI4 390 aaPredicted RBP11.47□□□□□ -0.57
SHMT2-234ENST00000557703 MED30Q96HR3 178 aa11.47□□□□□ -0.57
SHMT2-234ENST00000557703 OR5M11Q96RB7 305 aa11.47□□□□□ -0.57
SHMT2-234ENST00000557703 MGLLQ99685 303 aa11.47□□□□□ -0.57
SHMT2-234ENST00000557703 TMEM246Q9BRR3 403 aa11.47□□□□□ -0.57
SHMT2-234ENST00000557703 ACOT13Q9NPJ3 140 aa11.47□□□□□ -0.57
SHMT2-234ENST00000557703 DNAJB11Q9UBS4 358 aa11.47□□□□□ -0.57
SHMT2-234ENST00000557703 NSD1Q96L73 2696 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-234ENST00000557703 IGKV1-9A0A0C4DH69 117 aa11.46□□□□□ -0.57
SHMT2-234ENST00000557703 FAM230AA0A1W2PPH8 454 aa11.46□□□□□ -0.57
SHMT2-234ENST00000557703 CEACAM18A8MTB9 384 aa11.46□□□□□ -0.57
SHMT2-234ENST00000557703 A8MXK9 166 aa11.46□□□□□ -0.57
SHMT2-234ENST00000557703 TNFRSF13BO14836 293 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-234ENST00000557703 WNT2P09544 360 aa11.46□□□□□ -0.57
SHMT2-234ENST00000557703 GLRA1P23415 457 aa11.46□□□□□ -0.57
SHMT2-234ENST00000557703 RPS11P62280 158 aaKnown RBP eCLIP11.46□□□□□ -0.57
SHMT2-234ENST00000557703 EMX1Q04741 257 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-234ENST00000557703 DOC2BQ14184 412 aa11.46□□□□□ -0.57
SHMT2-234ENST00000557703 ESCO2Q56NI9 601 aa11.46□□□□□ -0.57
SHMT2-234ENST00000557703 UBE2UQ5VVX9 321 aa11.46□□□□□ -0.57
SHMT2-234ENST00000557703 CD276Q5ZPR3 534 aa11.46□□□□□ -0.57
SHMT2-234ENST00000557703 ZNF773Q6PK81 442 aa11.46□□□□□ -0.57
SHMT2-234ENST00000557703 FIP1L1Q6UN15 594 aaKnown RBP11.46□□□□□ -0.57
SHMT2-234ENST00000557703 UNQ9370/PRO34162Q6UXP9 181 aa11.46□□□□□ -0.57
SHMT2-234ENST00000557703 ZNF826PQ6ZT77 177 aa11.46□□□□□ -0.57
SHMT2-234ENST00000557703 OR8B3Q8NGG8 313 aa11.46□□□□□ -0.57
SHMT2-234ENST00000557703 RGP1Q92546 391 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-234ENST00000557703 TMIGD2Q96BF3 282 aa11.46□□□□□ -0.57
SHMT2-234ENST00000557703 OR8B2Q96RD0 313 aa11.46□□□□□ -0.57
SHMT2-234ENST00000557703 NRIP2Q9BQI9 281 aa11.46□□□□□ -0.57
SHMT2-234ENST00000557703 FGF23Q9GZV9 251 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-234ENST00000557703 PPP1R3EQ9H7J1 279 aa11.46□□□□□ -0.57
SHMT2-234ENST00000557703 PCDHB16Q9NRJ7 776 aa11.46□□□□□ -0.57
SHMT2-234ENST00000557703 DCAF16Q9NXF7 216 aa11.46□□□□□ -0.57
SHMT2-234ENST00000557703 NAV3Q8IVL0 2385 aa11.45□□□□□ -0.58
SHMT2-234ENST00000557703 TRBV5-7A0A0A0MS05 114 aa11.45□□□□□ -0.58
SHMT2-234ENST00000557703 IGHV3-64DA0A0J9YX35 117 aa11.45□□□□□ -0.58
SHMT2-234ENST00000557703 A6NIN4 97 aa11.45□□□□□ -0.58
SHMT2-234ENST00000557703 SC5DO75845 299 aa11.45□□□□□ -0.58
SHMT2-234ENST00000557703 ECDO95905 644 aaPredicted RBP11.45□□□□□ -0.58
SHMT2-234ENST00000557703 MSMBP08118 114 aa11.45□□□□□ -0.58
SHMT2-234ENST00000557703 RPS2P15880 293 aaKnown RBP11.45□□□□□ -0.58
SHMT2-234ENST00000557703 IGFBP3P17936 291 aaPredicted RBP11.45□□□□□ -0.58
SHMT2-234ENST00000557703 GABRA5P31644 462 aa11.45□□□□□ -0.58
SHMT2-234ENST00000557703 TGFBR2P37173 567 aa11.45□□□□□ -0.58
SHMT2-234ENST00000557703 ERVK11-1P61568 191 aa11.45□□□□□ -0.58
SHMT2-234ENST00000557703 PDZK1IP1Q13113 114 aa11.45□□□□□ -0.58
SHMT2-234ENST00000557703 KISS1Q15726 138 aa11.45□□□□□ -0.58
SHMT2-234ENST00000557703 GLCCI1Q86VQ1 547 aa11.45□□□□□ -0.58
SHMT2-234ENST00000557703 SPARTQ8N0X7 666 aa11.45□□□□□ -0.58
SHMT2-234ENST00000557703 NKAIN3Q8N8D7 197 aa11.45□□□□□ -0.58
SHMT2-234ENST00000557703 PNLDC1Q8NA58 520 aaKnown RBP11.45□□□□□ -0.58
SHMT2-234ENST00000557703 PXT1Q8NFP0 134 aa11.45□□□□□ -0.58
SHMT2-234ENST00000557703 OR13C9Q8NGT0 318 aa11.45□□□□□ -0.58
SHMT2-234ENST00000557703 SGCDQ92629 289 aa11.45□□□□□ -0.58
SHMT2-234ENST00000557703 MSI2Q96DH6 328 aaKnown RBP11.45□□□□□ -0.58
SHMT2-234ENST00000557703 CEP19Q96LK0 163 aa11.45□□□□□ -0.58
SHMT2-234ENST00000557703 HES4Q9HCC6 221 aa11.45□□□□□ -0.58
SHMT2-234ENST00000557703 VCX3AQ9NNX9 186 aa11.45□□□□□ -0.58
SHMT2-234ENST00000557703 NLKQ9UBE8 527 aa11.45□□□□□ -0.58
SHMT2-234ENST00000557703 KCNS2Q9ULS6 477 aa11.45□□□□□ -0.58
SHMT2-234ENST00000557703 SONP18583 2426 aaKnown RBP11.44□□□□□ -0.58
SHMT2-234ENST00000557703 A8MV72 311 aaPredicted RBP11.44□□□□□ -0.58
SHMT2-234ENST00000557703 C3orf80F5H4A9 247 aa11.44□□□□□ -0.58
SHMT2-234ENST00000557703 TRAPPC2LH3BP13 241 aa11.44□□□□□ -0.58
SHMT2-234ENST00000557703 J3QLI3 93 aa11.44□□□□□ -0.58
SHMT2-234ENST00000557703 WNT9BO14905 357 aa11.44□□□□□ -0.58
SHMT2-234ENST00000557703 LMX1BO60663 402 aa11.44□□□□□ -0.58
SHMT2-234ENST00000557703 ARL6IP5O75915 188 aa11.44□□□□□ -0.58
SHMT2-234ENST00000557703 LY6G6DO95868 133 aa11.44□□□□□ -0.58
SHMT2-234ENST00000557703 KNG1P01042 644 aa11.44□□□□□ -0.58
SHMT2-234ENST00000557703 TGFAP01135 160 aa11.44□□□□□ -0.58
SHMT2-234ENST00000557703 LIPFP07098 398 aa11.44□□□□□ -0.58
SHMT2-234ENST00000557703 HCKP08631 526 aa11.44□□□□□ -0.58
SHMT2-234ENST00000557703 HSMCR30P0CW71 290 aa11.44□□□□□ -0.58
SHMT2-234ENST00000557703 BDKRB2P30411 391 aa11.44□□□□□ -0.58
SHMT2-234ENST00000557703 SOX2P48431 317 aa11.44□□□□□ -0.58
SHMT2-234ENST00000557703 ACSM3Q53FZ2 586 aa11.44□□□□□ -0.58
SHMT2-234ENST00000557703 CALHM1Q8IU99 346 aa11.44□□□□□ -0.58
SHMT2-234ENST00000557703 PHC2Q8IXK0 858 aa11.44□□□□□ -0.58
SHMT2-234ENST00000557703 TRMT10AQ8TBZ6 339 aaKnown RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms