RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 LYZP61626 148 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 RPS23P62266 143 aaKnown RBP2.21□□□□□ -2.06
TRAV28-201ENST00000557548 RPL31P62899 125 aaKnown RBP2.21□□□□□ -2.06
TRAV28-201ENST00000557548 CACNG7P62955 275 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 DAZ2Q13117 558 aaKnown RBP2.21□□□□□ -2.06
TRAV28-201ENST00000557548 RGNQ15493 299 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 IL17AQ16552 155 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 BSXQ3C1V8 233 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 ACSM3Q53FZ2 586 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 SPIN3Q5JUX0 258 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 CPTPQ5TA50 214 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 C9orf84Q5VXU9 1444 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 RESP18Q5W5W9 173 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 OR2T5Q6IEZ7 315 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 DNM1P34Q6PK57 102 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 PLET1Q6UQ28 207 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 LRRN1Q6UXK5 716 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 MRPL52Q86TS9 123 aaKnown RBP2.21□□□□□ -2.06
TRAV28-201ENST00000557548 SLC51BQ86UW2 128 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 TMEM25Q86YD3 366 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 RAB43Q86YS6 212 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 TRAPPC5Q8IUR0 188 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 DCAF4L2Q8NA75 395 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 ACBD4Q8NC06 268 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 GPR26Q8NDV2 337 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 OR4K2Q8NGD2 314 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 OR2D3Q8NGH3 330 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 OR2T29Q8NH02 315 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 RNASEH2CQ8TDP1 164 aaKnown RBP2.21□□□□□ -2.06
TRAV28-201ENST00000557548 ZFP90Q8TF47 636 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 NELFBQ8WX92 580 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 DGCR14Q96DF8 476 aaKnown RBP2.21□□□□□ -2.06
TRAV28-201ENST00000557548 GALNT14Q96FL9 552 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 OR2M2Q96R28 347 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 CGREF1Q99674 301 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 SLC25A2Q9BXI2 301 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 TRABDQ9H4I3 376 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 DHX35Q9H5Z1 703 aaKnown RBP2.21□□□□□ -2.06
TRAV28-201ENST00000557548 RPS10P5Q9NQ39 176 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 DAZ3Q9NR90 486 aaKnown RBP2.21□□□□□ -2.06
TRAV28-201ENST00000557548 MMP26Q9NRE1 261 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 SLC2A9Q9NRM0 540 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 SPANXB1Q9NS25 103 aaPredicted RBP2.21□□□□□ -2.06
TRAV28-201ENST00000557548 RGS18Q9NS28 235 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 NLE1Q9NVX2 485 aaPredicted RBP2.21□□□□□ -2.06
TRAV28-201ENST00000557548 RHBDL2Q9NX52 303 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 ZNF225Q9UK10 706 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 CES1P1Q9UKY3 287 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 PAIP2BQ9ULR5 123 aaKnown RBP2.21□□□□□ -2.06
TRAV28-201ENST00000557548 PSG8Q9UQ74 426 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 ARL2BPQ9Y2Y0 163 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 MMACHCQ9Y4U1 282 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 KLF12Q9Y4X4 402 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 OR51B2Q9Y5P1 312 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 USH1CQ9Y6N9 552 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 ZNF142P52746 1687 aaPredicted RBP2.21□□□□□ -2.06
TRAV28-201ENST00000557548 ITSN2Q9NZM3 1697 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 KIAA0586Q9BVV6 1533 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 KIAA0232Q92628 1395 aa2.21□□□□□ -2.06
TRAV28-201ENST00000557548 RAPGEF6Q8TEU7 1601 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 UHRF1BP1LA0JNW5 1464 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 NUP153P49790 1475 aaKnown RBP2.2□□□□□ -2.06
TRAV28-201ENST00000557548 PCDH11XQ9BZA7 1347 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 POLR1AO95602 1720 aaPredicted RBP2.2□□□□□ -2.06
TRAV28-201ENST00000557548 A0A0B4J2E0 115 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 SLC5A10A0PJK1 596 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 PLAC8L1A1L4L8 177 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 H7C2Y5 167 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 CRXO43186 299 aaPredicted RBP2.2□□□□□ -2.06
TRAV28-201ENST00000557548 ENSAO43768 121 aaKnown RBP2.2□□□□□ -2.06
TRAV28-201ENST00000557548 CD5LO43866 347 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 SHOX2O60902 331 aaPredicted RBP2.2□□□□□ -2.06
TRAV28-201ENST00000557548 ALOX12BO75342 701 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 GABARAPO95166 117 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 SNAP29O95721 258 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 SERPINA1P01009 418 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 IGLV2-23P01705 113 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 TCRBP04435 133 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 IGHV4-34P06331 123 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 CDK1P06493 297 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 THRAP10827 490 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 CBR1P16152 277 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 ME2P23368 584 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 CCNE1P24864 410 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 ARL2P36404 184 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 OMPP47874 163 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 HCAR3P49019 387 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 CYB561P49447 251 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 CDK9P50750 372 aaKnown RBP2.2□□□□□ -2.06
TRAV28-201ENST00000557548 IDH3GP51553 393 aaPredicted RBP2.2□□□□□ -2.06
TRAV28-201ENST00000557548 P2RX1P51575 399 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 NDUFA8P51970 172 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 OR4D2P58180 307 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 DSCR10P59022 87 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 SPCS3P61009 180 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 RHOAP61586 193 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 LSM6P62312 80 aaKnown RBP2.2□□□□□ -2.06
TRAV28-201ENST00000557548 HMGCS1Q01581 520 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 AESQ08117 197 aa2.2□□□□□ -2.06
TRAV28-201ENST00000557548 SRSF6Q13247 344 aaKnown RBP2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms