RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 TBC1D26Q86UD7 250 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 MKXQ8IYA7 352 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 APOBEC4Q8WW27 367 aaKnown RBP4.42□□□□□ -1.7
SYNE2-223ENST00000557005 MCHR2Q969V1 340 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 GNPNAT1Q96EK6 184 aaPredicted RBP4.42□□□□□ -1.7
SYNE2-223ENST00000557005 GFI1Q99684 422 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 LMAN1LQ9HAT1 526 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 HS3ST3A1Q9Y663 406 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 A0A096LPE4 126 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 A0A1W2PPZ6 126 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 A0A1W2PR80 420 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 TLCD2A6NGC4 264 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 LINC00587B1AMM8 73 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 CYR61O00622 381 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 TGOLN2O43493 480 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 CXCL10P02778 98 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 IL9P15248 144 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 TCN2P20062 427 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 DTYMKP23919 212 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 PCBD1P61457 104 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 FZD2Q14332 565 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 NKAIN1Q4KMZ8 207 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 DBX2Q6ZNG2 339 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 AAED1Q7RTV5 226 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 YRDCQ86U90 279 aaKnown RBP4.42□□□□□ -1.7
SYNE2-223ENST00000557005 OR2AE1Q8NHA4 323 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 UHRF2Q96PU4 802 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 CDH20Q9HBT6 801 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 RYDENQ9NUL5 291 aaKnown RBP4.42□□□□□ -1.7
SYNE2-223ENST00000557005 ST3GAL6Q9Y274 331 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 TANC1Q9C0D5 1861 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 A0A1W2PNV4 684 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 C5orf49A4QMS7 147 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 OR4C45A6NMZ5 311 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 M0R135 149 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 ZNHIT1O43257 154 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 SPINT1O43278 529 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 PTBP3O95758 552 aaKnown RBP4.42□□□□□ -1.7
SYNE2-223ENST00000557005 ZBTB25P24278 435 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 DCDP81605 110 aaKnown RBP4.42□□□□□ -1.7
SYNE2-223ENST00000557005 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.42□□□□□ -1.7
SYNE2-223ENST00000557005 TRIM61Q5EBN2 209 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 TOMM20LQ6UXN7 152 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 Q7L0L9 218 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 ZNF799Q96GE5 643 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 OR10C1Q96KK4 312 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 LRRC61Q9BV99 259 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 HEXA-AS1Q9H8Q6 139 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 WDR81Q562E7 1941 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 DICER1Q9UPY3 1922 aaKnown RBP4.42□□□□□ -1.7
SYNE2-223ENST00000557005 J3QRE1 110 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 GATCO43716 136 aaKnown RBP4.42□□□□□ -1.7
SYNE2-223ENST00000557005 ZNF217O75362 1048 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 UPK3AO75631 287 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 CD1AP06126 327 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 GRPP07492 148 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 B4GALT1P15291 398 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 TPPP2P59282 170 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 EWSR1Q01844 656 aaKnown RBP eCLIP4.42□□□□□ -1.7
SYNE2-223ENST00000557005 NSUN5P2Q63ZY6 315 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 LHX8Q68G74 356 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 FAHD2BQ6P2I3 314 aaPredicted RBP4.42□□□□□ -1.7
SYNE2-223ENST00000557005 TMPRSS7Q7RTY8 843 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 LYZL2Q7Z4W2 148 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 SIGLECL1Q8N7X8 197 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 OR2I1PQ8NGU4 316 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 TMEM37Q8WXS4 190 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 IL22RA2Q969J5 263 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 ERGIC1Q969X5 290 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 HIST1H2BAQ96A08 127 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 FAHD2AQ96GK7 314 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 THOC3Q96J01 351 aaKnown RBP4.42□□□□□ -1.7
SYNE2-223ENST00000557005 GGACTQ9BVM4 153 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 SLC26A1Q9H2B4 701 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 MSL2Q9HCI7 577 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 MCTS1Q9ULC4 181 aaKnown RBP4.42□□□□□ -1.7
SYNE2-223ENST00000557005 RNF150Q9ULK6 438 aa4.42□□□□□ -1.7
SYNE2-223ENST00000557005 PQLC2LA1A4F0 135 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 TRDCB7Z8K6 153 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 CTSBP07858 339 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 VSIG8P0DPA2 414 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 PAX6P26367 422 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 HAAOP46952 286 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 CAPZBP47756 277 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 MESP2Q0VG99 397 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 MYBPHQ13203 477 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 MSMO1Q15800 293 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 FAM78BQ5VT40 261 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 SSX7Q7RTT5 188 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 SLC24A4Q8NFF2 622 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 NANOS1Q8WY41 292 aaKnown RBP4.41□□□□□ -1.7
SYNE2-223ENST00000557005 ELSPBP1Q96BH3 223 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 ZNF764Q96H86 408 aaPredicted RBP4.41□□□□□ -1.7
SYNE2-223ENST00000557005 ATP5SQ99766 215 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 SLC35D1Q9NTN3 355 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 MYOTQ9UBF9 498 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 DNAJB11Q9UBS4 358 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 SLCO1B1Q9Y6L6 691 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 ARL2-SNX15V9GYD0 113 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 TRBV5-7A0A0A0MS05 114 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms