RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 RNF170Q96K19 258 aa1.07□□□□□ -2.24
SCFD1-216ENST00000555550 PPP1R36Q96LQ0 422 aa1.07□□□□□ -2.24
SCFD1-216ENST00000555550 Q96MT0 163 aa1.07□□□□□ -2.24
SCFD1-216ENST00000555550 SCGB3A2Q96PL1 93 aa1.07□□□□□ -2.24
SCFD1-216ENST00000555550 TRIB3Q96RU7 358 aa1.07□□□□□ -2.24
SCFD1-216ENST00000555550 TMEM175Q9BSA9 504 aa1.07□□□□□ -2.24
SCFD1-216ENST00000555550 EXO5Q9H790 373 aa1.07□□□□□ -2.24
SCFD1-216ENST00000555550 RDH14Q9HBH5 336 aa1.07□□□□□ -2.24
SCFD1-216ENST00000555550 LYRM4Q9HD34 91 aa1.07□□□□□ -2.24
SCFD1-216ENST00000555550 MCUBQ9NWR8 336 aa1.07□□□□□ -2.24
SCFD1-216ENST00000555550 NINLQ9Y2I6 1382 aa1.07□□□□□ -2.24
SCFD1-216ENST00000555550 KCNE1BA0A087WTH5 132 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 KBTBD11-OT1A0A1B0GTJ5 212 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 G3V3Q6 166 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 BOLA2-SMG1P6H3BVE0 249 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 RGS5O15539 181 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 UPK1BO75841 260 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 AGTP01019 485 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 TRGV3P03979 118 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 HLA-GP17693 338 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 CPN2P22792 545 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 STOMP27105 288 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 GNRHRP30968 328 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 CFHR2P36980 270 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 RPS15AP62244 130 aaKnown RBP1.06□□□□□ -2.24
SCFD1-216ENST00000555550 RPS15P62841 145 aaKnown RBP1.06□□□□□ -2.24
SCFD1-216ENST00000555550 ENDOGQ14249 297 aaKnown RBP1.06□□□□□ -2.24
SCFD1-216ENST00000555550 BZW1Q7L1Q6 419 aaKnown RBP1.06□□□□□ -2.24
SCFD1-216ENST00000555550 FAM122BQ7Z309 247 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 LYPD6Q86Y78 171 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 RPRMLQ8N4K4 120 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 C8orf31Q8N9H6 132 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 BPIFB6Q8NFQ5 453 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 OR56A4Q8NGH8 313 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 OR52E5Q8NH55 327 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 PEX13Q92968 403 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 APH1AQ96BI3 265 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 CHP1Q99653 195 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 BPIFA3Q9BQP9 254 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 NCOR1P1Q9H4R4 102 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 TUBA4BQ9H853 241 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 VPS37BQ9H9H4 285 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 CCNB1IP1Q9NPC3 277 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 TMEM38BQ9NVV0 291 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 MRPL16Q9NX20 251 aaKnown RBP1.06□□□□□ -2.24
SCFD1-216ENST00000555550 RAB20Q9NX57 234 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 RABL2AQ9UBK7 228 aaPredicted RBP1.06□□□□□ -2.24
SCFD1-216ENST00000555550 PEF1Q9UBV8 284 aaKnown RBP1.06□□□□□ -2.24
SCFD1-216ENST00000555550 PPIL1Q9Y3C6 166 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 JCADQ9P266 1359 aa1.06□□□□□ -2.24
SCFD1-216ENST00000555550 NPHP4O75161 1426 aaPredicted RBP1.06□□□□□ -2.24
SCFD1-216ENST00000555550 HELZ2Q9BYK8 2649 aaKnown RBP1.05□□□□□ -2.24
SCFD1-216ENST00000555550 ZNF608Q9ULD9 1512 aaPredicted RBP1.05□□□□□ -2.24
SCFD1-216ENST00000555550 ZNF729A6NN14 1252 aaPredicted RBP1.05□□□□□ -2.24
SCFD1-216ENST00000555550 C9JQL5 133 aa1.05□□□□□ -2.24
SCFD1-216ENST00000555550 CASC3O15234 703 aaKnown RBP1.05□□□□□ -2.24
SCFD1-216ENST00000555550 AKR7A2O43488 359 aa1.05□□□□□ -2.24
SCFD1-216ENST00000555550 HLA-HP01893 362 aa1.05□□□□□ -2.24
SCFD1-216ENST00000555550 CRYGCP07315 174 aa1.05□□□□□ -2.24
SCFD1-216ENST00000555550 KRT16P08779 473 aa1.05□□□□□ -2.24
SCFD1-216ENST00000555550 ANXA8P13928 327 aa1.05□□□□□ -2.24
SCFD1-216ENST00000555550 CLDN18P56856 261 aa1.05□□□□□ -2.24
SCFD1-216ENST00000555550 ANXA8L1Q5VT79 327 aa1.05□□□□□ -2.24
SCFD1-216ENST00000555550 CARD17Q5XLA6 110 aa1.05□□□□□ -2.24
SCFD1-216ENST00000555550 ZNF567Q8N184 647 aa1.05□□□□□ -2.24
SCFD1-216ENST00000555550 OR5H2Q8NGV7 314 aa1.05□□□□□ -2.24
SCFD1-216ENST00000555550 GLYATL2Q8WU03 294 aa1.05□□□□□ -2.24
SCFD1-216ENST00000555550 PLIN2Q99541 437 aa1.05□□□□□ -2.24
SCFD1-216ENST00000555550 BCL7BQ9BQE9 202 aa1.05□□□□□ -2.24
SCFD1-216ENST00000555550 LRRC19Q9H756 370 aa1.05□□□□□ -2.24
SCFD1-216ENST00000555550 TDRD3Q9H7E2 651 aaKnown RBP1.05□□□□□ -2.24
SCFD1-216ENST00000555550 TBC1D24Q9ULP9 559 aa1.05□□□□□ -2.24
SCFD1-216ENST00000555550 ZNF443Q9Y2A4 671 aaPredicted RBP1.05□□□□□ -2.24
SCFD1-216ENST00000555550 CHTOPQ9Y3Y2 248 aaKnown RBP1.05□□□□□ -2.24
SCFD1-216ENST00000555550 MACF1Q9UPN3 7388 aaKnown RBP1.05□□□□□ -2.24
SCFD1-216ENST00000555550 MUC16Q8WXI7 14507 aa1.04□□□□□ -2.24
SCFD1-216ENST00000555550 BRCA1P38398 1863 aaKnown RBP1.04□□□□□ -2.24
SCFD1-216ENST00000555550 A0A1B0GTQ1 180 aa1.04□□□□□ -2.24
SCFD1-216ENST00000555550 LEUTXA8MZ59 168 aa1.04□□□□□ -2.24
SCFD1-216ENST00000555550 LINC01619G3V211 115 aa1.04□□□□□ -2.24
SCFD1-216ENST00000555550 K7ERS5 55 aa1.04□□□□□ -2.24
SCFD1-216ENST00000555550 PSIP1O75475 530 aaKnown RBP1.04□□□□□ -2.24
SCFD1-216ENST00000555550 SNAI1O95863 264 aaPredicted RBP1.04□□□□□ -2.24
SCFD1-216ENST00000555550 IFNW1P05000 195 aa1.04□□□□□ -2.24
SCFD1-216ENST00000555550 TPM2P07951 284 aa1.04□□□□□ -2.24
SCFD1-216ENST00000555550 OR4Q2P0C623 313 aa1.04□□□□□ -2.24
SCFD1-216ENST00000555550 PTHLHP12272 177 aa1.04□□□□□ -2.24
SCFD1-216ENST00000555550 SRMP19623 302 aa1.04□□□□□ -2.24
SCFD1-216ENST00000555550 TEAD1P28347 426 aa1.04□□□□□ -2.24
SCFD1-216ENST00000555550 RAB11AP62491 216 aa1.04□□□□□ -2.24
SCFD1-216ENST00000555550 HMGN5P82970 282 aaKnown RBP1.04□□□□□ -2.24
SCFD1-216ENST00000555550 NKAIN1Q4KMZ8 207 aa1.04□□□□□ -2.24
SCFD1-216ENST00000555550 Q6ZSA8 131 aa1.04□□□□□ -2.24
SCFD1-216ENST00000555550 APRG1Q8IVJ8 170 aa1.04□□□□□ -2.24
SCFD1-216ENST00000555550 AMN1Q8IY45 258 aa1.04□□□□□ -2.24
SCFD1-216ENST00000555550 GABRG1Q8N1C3 465 aa1.04□□□□□ -2.24
SCFD1-216ENST00000555550 CCDC148Q8NFR7 591 aa1.04□□□□□ -2.24
SCFD1-216ENST00000555550 AGR3Q8TD06 166 aa1.04□□□□□ -2.24
SCFD1-216ENST00000555550 FAM19A4Q96LR4 140 aa1.04□□□□□ -2.24
SCFD1-216ENST00000555550 MTG1Q9BT17 334 aaPredicted RBP1.04□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms