RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 OR2AT4A6NND4 320 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 DHRS7CA6NNS2 312 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 J3QT63 122 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 CASQ2O14958 399 aaPredicted RBP9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 ENSAO43768 121 aaKnown RBP9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 MMP9P14780 707 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 GABRA2P47869 451 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 GTF2A1P52655 376 aaPredicted RBP9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 ARF6P62330 175 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 RAB40BQ12829 278 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 ALKBH1Q13686 389 aaKnown RBP9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 ATPAF1Q5TC12 328 aaPredicted RBP9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 RUSC1-AS1Q66K80 236 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 XAF1Q6GPH4 301 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 BRD3OSQ6XYD6 125 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 ACP7Q6ZNF0 438 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 ZNF788Q6ZQV5 615 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 KCTD20Q7Z5Y7 419 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 BPIFB2Q8N4F0 458 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 CD177Q8N6Q3 437 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 PACRGLQ8N7B6 248 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 SIGLECL1Q8N7X8 197 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 POC1AQ8NBT0 407 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 ZNRF1Q8ND25 227 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 ZNF671Q8TAW3 534 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 NRG4Q8WWG1 115 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 TMIGD2Q96BF3 282 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 DUX5Q96PT3 197 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 PLEKHA1Q9HB21 404 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 CLEC2DQ9UHP7 191 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 RPUSD1Q9UJJ7 312 aaKnown RBP9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 ZNF222Q9UK12 451 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 MAB21L2Q9Y586 359 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 PCDHGB1Q9Y5G3 927 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 SIRT4Q9Y6E7 314 aaPredicted RBP9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 RFPL4AA6NLU0 287 aa9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 ZNF879B4DU55 563 aa9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 RFPL4AL1F8VTS6 287 aa9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 SIGLEC5O15389 551 aa9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 NDUFB3O43676 98 aa9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 ZFPL1O95159 310 aa9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 ACAA1P09110 424 aaPredicted RBP9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 UBCP0CG48 685 aaKnown RBP9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 PGA5P0DJD9 388 aa9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 CALCBP10092 127 aa9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 NPY4RP50391 375 aa9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 GABPB1Q06547 395 aaPredicted RBP9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 TUSC1Q2TAM9 212 aa9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 KLHL22Q53GT1 634 aa9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 OR2G6Q5TZ20 316 aa9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 TMEM244Q5VVB8 128 aa9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 TTC23Q5W5X9 447 aa9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 CD276Q5ZPR3 534 aa9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 ZNF573Q86YE8 665 aa9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 PDZD9Q8IXQ8 264 aa9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 ZNF676Q8N7Q3 588 aa9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 ZDHHC22Q8N966 263 aa9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 ZNF418Q8TF45 676 aaPredicted RBP9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 H1FXQ92522 213 aaKnown RBP9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 ITFG2Q969R8 447 aa9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 SLAMF9Q96A28 289 aa9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 C12orf43Q96C57 262 aaKnown RBP9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 C1orf147Q96MC9 270 aaPredicted RBP9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 SPACA5Q96QH8 159 aa9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 PDCD1LG2Q9BQ51 273 aa9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 NRIP2Q9BQI9 281 aa9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 CHST5Q9GZS9 411 aa9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 SIRPDQ9H106 197 aa9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 FGF20Q9NP95 211 aaPredicted RBP9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 MTCH1Q9NZJ7 389 aa9.56□□□□□ -0.88
CCDC88C-208ENST00000554165 NKX6-3A6NJ46 265 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 XPNPEP2O43895 674 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 TOX4O94842 621 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 LALBAP00709 142 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 ISG15P05161 165 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 NDUFB7P17568 137 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 MPZP25189 248 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 CAPGP40121 348 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 CCR9P51686 369 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 HILS1P60008 231 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 ERVK11-1P61568 191 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 ACTA2P62736 377 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 ACTG2P63267 376 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 IL13RA1P78552 427 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 DOC2BQ14184 412 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 SLC25A26Q70HW3 274 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 SLC36A1Q7Z2H8 476 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 SYS1Q8N2H4 156 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 TEX29Q8N6K0 151 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 LY6G5BQ8NDX9 201 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 OR13C3Q8NGS6 347 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 RGP1Q92546 391 aaPredicted RBP9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 TAF15Q92804 592 aaKnown RBP eCLIP9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 GGHQ92820 318 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 RFT1Q96AA3 541 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 WDFY2Q96P53 400 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 DCTN5Q9BTE1 182 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 SUCNR1Q9BXA5 334 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 CNTD2Q9H8S5 307 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms