RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 H0YL77 283 aa12.3□□□□□ -0.44
SHMT2-210ENST00000553950 TRAPPC2LH3BP13 241 aa12.3□□□□□ -0.44
SHMT2-210ENST00000553950 KDM4BO94953 1096 aa12.3□□□□□ -0.44
SHMT2-210ENST00000553950 CSTBP04080 98 aaKnown RBP12.3□□□□□ -0.44
SHMT2-210ENST00000553950 ACAA1P09110 424 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-210ENST00000553950 MRPS11P82912 194 aaKnown RBP12.3□□□□□ -0.44
SHMT2-210ENST00000553950 MAB21L1Q13394 359 aa12.3□□□□□ -0.44
SHMT2-210ENST00000553950 RSU1Q15404 277 aa12.3□□□□□ -0.44
SHMT2-210ENST00000553950 ZNF181Q2M3W8 571 aa12.3□□□□□ -0.44
SHMT2-210ENST00000553950 SLC25A26Q70HW3 274 aa12.3□□□□□ -0.44
SHMT2-210ENST00000553950 NR2C2APQ86WQ0 139 aa12.3□□□□□ -0.44
SHMT2-210ENST00000553950 ANGPTL5Q86XS5 388 aa12.3□□□□□ -0.44
SHMT2-210ENST00000553950 OR4D6Q8NGJ1 314 aa12.3□□□□□ -0.44
SHMT2-210ENST00000553950 OR5D18Q8NGL1 313 aa12.3□□□□□ -0.44
SHMT2-210ENST00000553950 KCNG3Q8TAE7 436 aa12.3□□□□□ -0.44
SHMT2-210ENST00000553950 Q8TCH9 128 aa12.3□□□□□ -0.44
SHMT2-210ENST00000553950 ITLN1Q8WWA0 313 aa12.3□□□□□ -0.44
SHMT2-210ENST00000553950 AQP3Q92482 292 aa12.3□□□□□ -0.44
SHMT2-210ENST00000553950 GTF3AQ92664 365 aaKnown RBP12.3□□□□□ -0.44
SHMT2-210ENST00000553950 MARVELD3Q96A59 401 aa12.3□□□□□ -0.44
SHMT2-210ENST00000553950 PTX4Q96A99 478 aa12.3□□□□□ -0.44
SHMT2-210ENST00000553950 RFT1Q96AA3 541 aa12.3□□□□□ -0.44
SHMT2-210ENST00000553950 FAM3DQ96BQ1 224 aa12.3□□□□□ -0.44
SHMT2-210ENST00000553950 CMTM3Q96MX0 182 aa12.3□□□□□ -0.44
SHMT2-210ENST00000553950 VRK1Q99986 396 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-210ENST00000553950 CACNG6Q9BXT2 260 aa12.3□□□□□ -0.44
SHMT2-210ENST00000553950 BARHL1Q9BZE3 327 aa12.3□□□□□ -0.44
SHMT2-210ENST00000553950 SLIRPQ9GZT3 109 aaKnown RBP12.3□□□□□ -0.44
SHMT2-210ENST00000553950 MMP27Q9H306 513 aa12.3□□□□□ -0.44
SHMT2-210ENST00000553950 SPATA2Q9UM82 520 aa12.3□□□□□ -0.44
SHMT2-210ENST00000553950 LAMP3Q9UQV4 416 aa12.3□□□□□ -0.44
SHMT2-210ENST00000553950 NPTNQ9Y639 398 aa12.3□□□□□ -0.44
SHMT2-210ENST00000553950 COL12A1Q99715 3063 aa12.3□□□□□ -0.44
SHMT2-210ENST00000553950 DYSFO75923 2080 aa12.3□□□□□ -0.44
SHMT2-210ENST00000553950 hCG_1807616A0A1W2PRN6 198 aa12.29□□□□□ -0.44
SHMT2-210ENST00000553950 H3BUI4 141 aa12.29□□□□□ -0.44
SHMT2-210ENST00000553950 GRPP07492 148 aa12.29□□□□□ -0.44
SHMT2-210ENST00000553950 SOD3P08294 240 aa12.29□□□□□ -0.44
SHMT2-210ENST00000553950 RAB6AP20340 208 aa12.29□□□□□ -0.44
SHMT2-210ENST00000553950 S100A5P33763 92 aa12.29□□□□□ -0.44
SHMT2-210ENST00000553950 CFHR2P36980 270 aa12.29□□□□□ -0.44
SHMT2-210ENST00000553950 CAV3P56539 151 aa12.29□□□□□ -0.44
SHMT2-210ENST00000553950 GLIPR1L1Q6UWM5 242 aa12.29□□□□□ -0.44
SHMT2-210ENST00000553950 ASCL4Q6XD76 172 aa12.29□□□□□ -0.44
SHMT2-210ENST00000553950 LINC00299Q6ZSB3 139 aa12.29□□□□□ -0.44
SHMT2-210ENST00000553950 WDR86Q86TI4 376 aa12.29□□□□□ -0.44
SHMT2-210ENST00000553950 CDH24Q86UP0 819 aa12.29□□□□□ -0.44
SHMT2-210ENST00000553950 POC1AQ8NBT0 407 aa12.29□□□□□ -0.44
SHMT2-210ENST00000553950 SCCPDHQ8NBX0 429 aa12.29□□□□□ -0.44
SHMT2-210ENST00000553950 POM121Q96HA1 1249 aa12.29□□□□□ -0.44
SHMT2-210ENST00000553950 CEP19Q96LK0 163 aa12.29□□□□□ -0.44
SHMT2-210ENST00000553950 URM1Q9BTM9 101 aaKnown RBP12.29□□□□□ -0.44
SHMT2-210ENST00000553950 FGF23Q9GZV9 251 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-210ENST00000553950 PPP1R3EQ9H7J1 279 aa12.29□□□□□ -0.44
SHMT2-210ENST00000553950 ELL3Q9HB65 397 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-210ENST00000553950 MYOZ1Q9NP98 299 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-210ENST00000553950 PPP1R3CQ9UQK1 317 aa12.29□□□□□ -0.44
SHMT2-210ENST00000553950 PEX16Q9Y5Y5 336 aa12.29□□□□□ -0.44
SHMT2-210ENST00000553950 NOS1APO75052 506 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-210ENST00000553950 CLPXO76031 633 aa12.28□□□□□ -0.44
SHMT2-210ENST00000553950 PLATP00750 562 aa12.28□□□□□ -0.44
SHMT2-210ENST00000553950 GTF2F2P13984 249 aa12.28□□□□□ -0.44
SHMT2-210ENST00000553950 CCL8P80075 99 aa12.28□□□□□ -0.44
SHMT2-210ENST00000553950 SMIM21Q3B7S5 101 aa12.28□□□□□ -0.44
SHMT2-210ENST00000553950 UBE2NLQ5JXB2 153 aa12.28□□□□□ -0.44
SHMT2-210ENST00000553950 PRAMEF6Q5VXH4 476 aa12.28□□□□□ -0.44
SHMT2-210ENST00000553950 LINC00596Q86U02 117 aa12.28□□□□□ -0.44
SHMT2-210ENST00000553950 FAM90A1Q86YD7 464 aa12.28□□□□□ -0.44
SHMT2-210ENST00000553950 CALHM1Q8IU99 346 aa12.28□□□□□ -0.44
SHMT2-210ENST00000553950 OR51F2Q8NH61 342 aa12.28□□□□□ -0.44
SHMT2-210ENST00000553950 LGALS14Q8TCE9 139 aa12.28□□□□□ -0.44
SHMT2-210ENST00000553950 RAB40AQ8WXH6 277 aa12.28□□□□□ -0.44
SHMT2-210ENST00000553950 TMEM59Q9BXS4 323 aa12.28□□□□□ -0.44
SHMT2-210ENST00000553950 C6orf62Q9GZU0 229 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-210ENST00000553950 NXF2Q9GZY0 626 aaKnown RBP12.28□□□□□ -0.44
SHMT2-210ENST00000553950 BARX1Q9HBU1 254 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-210ENST00000553950 DLL4Q9NR61 685 aa12.28□□□□□ -0.44
SHMT2-210ENST00000553950 RASL12Q9NYN1 266 aa12.28□□□□□ -0.44
SHMT2-210ENST00000553950 A0A0A6YYH2 397 aa12.27□□□□□ -0.45
SHMT2-210ENST00000553950 METTL21EPA6NDL7 271 aa12.27□□□□□ -0.45
SHMT2-210ENST00000553950 A6NJ64 397 aa12.27□□□□□ -0.45
SHMT2-210ENST00000553950 CDIPTO14735 213 aa12.27□□□□□ -0.45
SHMT2-210ENST00000553950 SPRY1O43609 319 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-210ENST00000553950 CD8AP01732 235 aa12.27□□□□□ -0.45
SHMT2-210ENST00000553950 PGA5P0DJD9 388 aa12.27□□□□□ -0.45
SHMT2-210ENST00000553950 SLC2A2P11168 524 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-210ENST00000553950 CPT2P23786 658 aa12.27□□□□□ -0.45
SHMT2-210ENST00000553950 TALDO1P37837 337 aa12.27□□□□□ -0.45
SHMT2-210ENST00000553950 P2RY14Q15391 338 aa12.27□□□□□ -0.45
SHMT2-210ENST00000553950 SLC22A6Q4U2R8 563 aa12.27□□□□□ -0.45
SHMT2-210ENST00000553950 DMRTC1Q5HYR2 192 aa12.27□□□□□ -0.45
SHMT2-210ENST00000553950 NHLRC3Q5JS37 347 aa12.27□□□□□ -0.45
SHMT2-210ENST00000553950 ELP2Q6IA86 826 aa12.27□□□□□ -0.45
SHMT2-210ENST00000553950 WDR82Q6UXN9 313 aa12.27□□□□□ -0.45
SHMT2-210ENST00000553950 MOGAT3Q86VF5 341 aa12.27□□□□□ -0.45
SHMT2-210ENST00000553950 LRRC28Q86X40 367 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-210ENST00000553950 ZNF295-AS1Q8N0V1 137 aa12.27□□□□□ -0.45
SHMT2-210ENST00000553950 OR51D1Q8NGF3 324 aa12.27□□□□□ -0.45
SHMT2-210ENST00000553950 SLC25A28Q96A46 364 aa12.27□□□□□ -0.45
SHMT2-210ENST00000553950 PHF21AQ96BD5 680 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms