RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 IL17RELQ6ZVW7 336 aa11.77□□□□□ -0.53
PTCH1-226ENST00000553011 NLRC3Q7RTR2 1065 aa11.77□□□□□ -0.53
PTCH1-226ENST00000553011 BATF2Q8N1L9 274 aa11.77□□□□□ -0.53
PTCH1-226ENST00000553011 OR5T2Q8NGG2 359 aa11.77□□□□□ -0.53
PTCH1-226ENST00000553011 ZNF671Q8TAW3 534 aa11.77□□□□□ -0.53
PTCH1-226ENST00000553011 GPR148Q8TDV2 347 aa11.77□□□□□ -0.53
PTCH1-226ENST00000553011 GHSRQ92847 366 aa11.77□□□□□ -0.53
PTCH1-226ENST00000553011 BORCS8Q96FH0 119 aa11.77□□□□□ -0.53
PTCH1-226ENST00000553011 TECTBQ96PL2 329 aa11.77□□□□□ -0.53
PTCH1-226ENST00000553011 SSBP3Q9BWW4 388 aaPredicted RBP11.77□□□□□ -0.53
PTCH1-226ENST00000553011 DNAJB11Q9UBS4 358 aa11.77□□□□□ -0.53
PTCH1-226ENST00000553011 LRCH1Q9Y2L9 728 aa11.77□□□□□ -0.53
PTCH1-226ENST00000553011 A0A1B0GW55 424 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 A8MXK9 166 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 RGS10O43665 173 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 CRLF1O75462 422 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 FCN3O75636 299 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 PLATP00750 562 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 DUX4L2P0CJ85 424 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 DUX4L3P0CJ86 424 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 DUX4L4P0CJ87 422 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 DUX4L5P0CJ88 424 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 DUX4L6P0CJ89 424 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 DUX4L7P0CJ90 424 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 HOXB4P17483 251 aaPredicted RBP11.76□□□□□ -0.53
PTCH1-226ENST00000553011 AMY2BP19961 511 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 GLRA1P23415 457 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 MPZP25189 248 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 AZGP1P25311 298 aaKnown RBP11.76□□□□□ -0.53
PTCH1-226ENST00000553011 TAS2R43P59537 309 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 GNB2P62879 340 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 FAM120AOSQ5T036 256 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 DUX4L9Q6RFH8 374 aaPredicted RBP11.76□□□□□ -0.53
PTCH1-226ENST00000553011 ZNF841Q6ZN19 808 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 RNF144BQ7Z419 303 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 PARP16Q8N5Y8 322 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 POC1AQ8NBT0 407 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 DNAAF1Q8NEP3 725 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 PGLYRP3Q96LB9 341 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 OR5M11Q96RB7 305 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 CCL13Q99616 98 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 MND1Q9BWT6 205 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 PKIBQ9C010 78 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 RASSF4Q9H2L5 321 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 ZCCHC4Q9H5U6 513 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 MMP26Q9NRE1 261 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 TMEM160Q9NX00 188 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 DUX4Q9UBX2 424 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 ZNF281Q9Y2X9 895 aa11.76□□□□□ -0.53
PTCH1-226ENST00000553011 LSM2Q9Y333 95 aaKnown RBP11.76□□□□□ -0.53
PTCH1-226ENST00000553011 TRAPPC2LH3BP13 241 aa11.75□□□□□ -0.53
PTCH1-226ENST00000553011 DENRO43583 198 aaKnown RBP11.75□□□□□ -0.53
PTCH1-226ENST00000553011 NDUFA2O43678 99 aa11.75□□□□□ -0.53
PTCH1-226ENST00000553011 INMTO95050 263 aa11.75□□□□□ -0.53
PTCH1-226ENST00000553011 PGA5P0DJD9 388 aa11.75□□□□□ -0.53
PTCH1-226ENST00000553011 CELP19835 753 aa11.75□□□□□ -0.53
PTCH1-226ENST00000553011 PRKACBP22694 351 aa11.75□□□□□ -0.53
PTCH1-226ENST00000553011 CPT2P23786 658 aa11.75□□□□□ -0.53
PTCH1-226ENST00000553011 ATP1B3P54709 279 aa11.75□□□□□ -0.53
PTCH1-226ENST00000553011 RPS11P62280 158 aaKnown RBP eCLIP11.75□□□□□ -0.53
PTCH1-226ENST00000553011 RBM48Q5RL73 367 aaKnown RBP11.75□□□□□ -0.53
PTCH1-226ENST00000553011 WDR25Q64LD2 544 aaPredicted RBP11.75□□□□□ -0.53
PTCH1-226ENST00000553011 STUMQ69YW2 141 aa11.75□□□□□ -0.53
PTCH1-226ENST00000553011 ASPHD2Q6ICH7 369 aa11.75□□□□□ -0.53
PTCH1-226ENST00000553011 FAHD2BQ6P2I3 314 aaPredicted RBP11.75□□□□□ -0.53
PTCH1-226ENST00000553011 SERPINA12Q8IW75 414 aa11.75□□□□□ -0.53
PTCH1-226ENST00000553011 TMEM106AQ96A25 262 aa11.75□□□□□ -0.53
PTCH1-226ENST00000553011 RFT1Q96AA3 541 aa11.75□□□□□ -0.53
PTCH1-226ENST00000553011 TMIGD2Q96BF3 282 aa11.75□□□□□ -0.53
PTCH1-226ENST00000553011 C12orf43Q96C57 262 aaKnown RBP11.75□□□□□ -0.53
PTCH1-226ENST00000553011 FAHD2AQ96GK7 314 aa11.75□□□□□ -0.53
PTCH1-226ENST00000553011 OPALINQ96PE5 141 aa11.75□□□□□ -0.53
PTCH1-226ENST00000553011 SPACA5Q96QH8 159 aa11.75□□□□□ -0.53
PTCH1-226ENST00000553011 CCDC90BQ9GZT6 254 aa11.75□□□□□ -0.53
PTCH1-226ENST00000553011 Q9H521 79 aa11.75□□□□□ -0.53
PTCH1-226ENST00000553011 SMURF1Q9HCE7 757 aa11.75□□□□□ -0.53
PTCH1-226ENST00000553011 NLKQ9UBE8 527 aa11.75□□□□□ -0.53
PTCH1-226ENST00000553011 CLN8Q9UBY8 286 aa11.75□□□□□ -0.53
PTCH1-226ENST00000553011 POLDIP2Q9Y2S7 368 aa11.75□□□□□ -0.53
PTCH1-226ENST00000553011 POLR3KQ9Y2Y1 108 aaPredicted RBP11.75□□□□□ -0.53
PTCH1-226ENST00000553011 A0A0G2JMP0 313 aa11.74□□□□□ -0.53
PTCH1-226ENST00000553011 TRBV5-5A0A0J9YX44 114 aa11.74□□□□□ -0.53
PTCH1-226ENST00000553011 A0A0X1KG70 313 aa11.74□□□□□ -0.53
PTCH1-226ENST00000553011 TMPRSS2O15393 492 aa11.74□□□□□ -0.53
PTCH1-226ENST00000553011 NOS1APO75052 506 aaPredicted RBP11.74□□□□□ -0.53
PTCH1-226ENST00000553011 OCM2P0CE71 109 aa11.74□□□□□ -0.53
PTCH1-226ENST00000553011 OCMP0CE72 109 aaPredicted RBP11.74□□□□□ -0.53
PTCH1-226ENST00000553011 SELLP14151 372 aa11.74□□□□□ -0.53
PTCH1-226ENST00000553011 MAP2K4P45985 399 aa11.74□□□□□ -0.53
PTCH1-226ENST00000553011 POU3F4P49335 361 aa11.74□□□□□ -0.53
PTCH1-226ENST00000553011 RBP2P50120 134 aa11.74□□□□□ -0.53
PTCH1-226ENST00000553011 MTCP1P56278 107 aa11.74□□□□□ -0.53
PTCH1-226ENST00000553011 IL24Q13007 206 aa11.74□□□□□ -0.53
PTCH1-226ENST00000553011 SPHARQ15513 63 aa11.74□□□□□ -0.53
PTCH1-226ENST00000553011 CHRFAM7AQ494W8 412 aa11.74□□□□□ -0.53
PTCH1-226ENST00000553011 DCAF12L2Q5VW00 463 aa11.74□□□□□ -0.53
PTCH1-226ENST00000553011 CRIP3Q6Q6R5 217 aa11.74□□□□□ -0.53
PTCH1-226ENST00000553011 ACP7Q6ZNF0 438 aa11.74□□□□□ -0.53
PTCH1-226ENST00000553011 SLC25A26Q70HW3 274 aa11.74□□□□□ -0.53
PTCH1-226ENST00000553011 PRSS48Q7RTY5 328 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms