RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, human

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LIMA1-215	ENST00000552823		F8VVB4	439 aa		4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823		F8VWA3	439 aa		4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	MTRF1	O75570	445 aa	Known RBP	4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	AGFG2	O95081	481 aa		4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	PMS2P2	O95744	297 aa		4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	BPNT1	O95861	308 aa		4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	PDGFA	P04085	211 aa		4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	TDGF1	P13385	188 aa		4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	ICAM2	P13598	275 aa		4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	OMG	P23515	440 aa		4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	LTC4S	Q16873	150 aa		4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	LY6G6F	Q5SQ64	297 aa		4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	HAGHL	Q6PII5	290 aa	Predicted RBP	4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	SLC22A25	Q6T423	547 aa		4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	MRPL21	Q7Z2W9	205 aa	Known RBP	4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	GGN	Q86UU5	652 aa		4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	TMEM123	Q8N131	208 aa		4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	INO80E	Q8NBZ0	244 aa	Predicted RBP	4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	AQP3	Q92482	292 aa		4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	NABP1	Q96AH0	204 aa		4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	RBMXL1	Q96E39	390 aa	Known RBP	4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	PHB2	Q99623	299 aa		4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	PRRT1	Q99946	306 aa		4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	PECR	Q9BY49	303 aa		4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	TTTY12	Q9BZ98	90 aa		4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	FN3KRP	Q9HA64	309 aa		4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	TMEM38B	Q9NVV0	291 aa		4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	RALY	Q9UKM9	306 aa	Known RBP	4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	ITGB1BP2	Q9UKP3	347 aa		4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	SLC7A11	Q9UPY5	501 aa		4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	STARD10	Q9Y365	291 aa		4.87	□□□□□ -1.63
LIMA1-215	ENST00000552823	PLSCR5	A0PG75	271 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	ZNF503-AS2	A6NEH8	195 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	C19orf67	A6NJJ6	358 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	TMEM14DP	A8MWL7	114 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	LILRA1	O75019	489 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	NEURL1	O76050	574 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	DKK1	O94907	266 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	VAMP5	O95183	116 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	IGHV3-13	P01766	116 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	IGHV3-7	P01780	117 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	IL5	P05113	134 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	ISG15	P05161	165 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	M6PR	P20645	277 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	B3GALT5-AS1	P59052	145 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	ERVS71-1	P61550	626 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	H3F3A	P84243	136 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	TRA2A	Q13595	282 aa	Known RBP eCLIP	4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	TRIP6	Q15654	476 aa	Known RBP	4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	DEFB109B	Q30KR1	87 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	ABCA11P	Q4W5N1	156 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	ESCO2	Q56NI9	601 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	DRAM2	Q6UX65	266 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	PGAP1	Q75T13	922 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	HDDC2	Q7Z4H3	204 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	OR13G1	Q8NGZ3	307 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	TERB2	Q8NHR7	220 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	SUN5	Q8TC36	379 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	SECTM1	Q8WVN6	248 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	TMED6	Q8WW62	240 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	THRSP	Q92748	146 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	INTS12	Q96CB8	462 aa	Known RBP	4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	LINC00052	Q96N35	136 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	SULT4A1	Q9BR01	284 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	METTL9	Q9H1A3	318 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	WNT5B	Q9H1J7	359 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	TMEM9B	Q9NQ34	198 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	UFSP2	Q9NUQ7	469 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	ASF1B	Q9NVP2	202 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	ABI3	Q9P2A4	366 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	OR14J1	Q9UGF5	321 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	SPEF1	Q9Y4P9	236 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	TIMM10B	Q9Y5J6	103 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	NCKAP5	O14513	1909 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	CACNA1A	O00555	2505 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	TRAV14DV4	A0A0A6YYC5	116 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	OR14I1	A6ND48	311 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	GJE1	A6NN92	205 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	SNRPGP15	A8MWD9	76 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	EFS	O43281	561 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	EIF3G	O75821	320 aa	Known RBP eCLIP	4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	GRP	P07492	148 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	ADH6	P28332	368 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	GSK3A	P49840	483 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	RBP2	P50120	134 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	SOX8	P57073	446 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	ECH1	Q13011	328 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	SLC25A53	Q5H9E4	307 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	RNFT1	Q5M7Z0	435 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	VHLL	Q6RSH7	139 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	CLEC18B	Q6UXF7	455 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	LYG2	Q86SG7	212 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	CCDC28A	Q8IWP9	274 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	STPG2	Q8N412	459 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	TMEM185A	Q8NFB2	350 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	MRGPRF	Q96AM1	343 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	CMTM3	Q96MX0	182 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	SLC25A21	Q9BQT8	299 aa	Predicted RBP	4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	OR2H1	Q9GZK4	316 aa		4.86	□□□□□ -1.63
LIMA1-215	ENST00000552823	MAGT1	Q9H0U3	335 aa		4.86	□□□□□ -1.63

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