RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 SOHLH1Q5JUK2 328 aa13.83□□□□□ -0.2
CUX1-211ENST00000546411 OR5M8Q8NGP6 311 aa13.83□□□□□ -0.2
CUX1-211ENST00000546411 MS4A3Q96HJ5 214 aa13.83□□□□□ -0.2
CUX1-211ENST00000546411 NKX6-2Q9C056 277 aaPredicted RBP13.83□□□□□ -0.2
CUX1-211ENST00000546411 A0A0J9YW62 118 aa13.83□□□□□ -0.2
CUX1-211ENST00000546411 GABRA1P14867 456 aa13.83□□□□□ -0.2
CUX1-211ENST00000546411 EFNB1P98172 346 aa13.83□□□□□ -0.2
CUX1-211ENST00000546411 CLPPQ16740 277 aaPredicted RBP13.83□□□□□ -0.2
CUX1-211ENST00000546411 OR2T2Q6IF00 324 aa13.83□□□□□ -0.2
CUX1-211ENST00000546411 TMPRSS7Q7RTY8 843 aa13.83□□□□□ -0.2
CUX1-211ENST00000546411 FAM181AQ8N9Y4 354 aa13.83□□□□□ -0.2
CUX1-211ENST00000546411 OR2G3Q8NGZ4 309 aa13.83□□□□□ -0.2
CUX1-211ENST00000546411 SLC39A7Q92504 469 aa13.83□□□□□ -0.2
CUX1-211ENST00000546411 SLC25A32Q9H2D1 315 aa13.83□□□□□ -0.2
CUX1-211ENST00000546411 TCFL5Q9UL49 500 aa13.83□□□□□ -0.2
CUX1-211ENST00000546411 HEATR5AQ86XA9 2040 aa13.82□□□□□ -0.2
CUX1-211ENST00000546411 IGKV1D-43A0A0B4J1Z2 117 aa13.82□□□□□ -0.2
CUX1-211ENST00000546411 LINC00052Q96N35 136 aa13.82□□□□□ -0.2
CUX1-211ENST00000546411 TOX3O15405 576 aaPredicted RBP13.82□□□□□ -0.2
CUX1-211ENST00000546411 MECP2P51608 486 aaKnown RBP13.82□□□□□ -0.2
CUX1-211ENST00000546411 ADAM5Q6NVV9 412 aa13.82□□□□□ -0.2
CUX1-211ENST00000546411 ST7LQ8TDW4 575 aa13.82□□□□□ -0.2
CUX1-211ENST00000546411 EXTL1Q92935 676 aa13.82□□□□□ -0.2
CUX1-211ENST00000546411 TXNL1O43396 289 aa13.82□□□□□ -0.2
CUX1-211ENST00000546411 RAC3P60763 192 aa13.82□□□□□ -0.2
CUX1-211ENST00000546411 UNQ9370/PRO34162Q6UXP9 181 aa13.82□□□□□ -0.2
CUX1-211ENST00000546411 ZDHHC22Q8N966 263 aa13.82□□□□□ -0.2
CUX1-211ENST00000546411 TRIB1Q96RU8 372 aa13.82□□□□□ -0.2
CUX1-211ENST00000546411 EDEM2Q9BV94 578 aa13.82□□□□□ -0.2
CUX1-211ENST00000546411 WDR13Q9H1Z4 485 aa13.82□□□□□ -0.2
CUX1-211ENST00000546411 GHRLQ9UBU3 117 aa13.82□□□□□ -0.2
CUX1-211ENST00000546411 FAM96BQ9Y3D0 163 aa13.82□□□□□ -0.2
CUX1-211ENST00000546411 PKDREJQ9NTG1 2253 aa13.82□□□□□ -0.2
CUX1-211ENST00000546411 DUS4LO95620 317 aaKnown RBP13.82□□□□□ -0.2
CUX1-211ENST00000546411 LIMK1P53667 647 aa13.82□□□□□ -0.2
CUX1-211ENST00000546411 C19orf57Q0VDD7 668 aa13.82□□□□□ -0.2
CUX1-211ENST00000546411 SIGIRRQ6IA17 410 aa13.82□□□□□ -0.2
CUX1-211ENST00000546411 ZDHHC23Q8IYP9 409 aa13.82□□□□□ -0.2
CUX1-211ENST00000546411 RBMXL1Q96E39 390 aaKnown RBP13.82□□□□□ -0.2
CUX1-211ENST00000546411 DHRS9Q9BPW9 319 aa13.82□□□□□ -0.2
CUX1-211ENST00000546411 KIF25Q9UIL4 384 aa13.82□□□□□ -0.2
CUX1-211ENST00000546411 KIR2DS1A0A191URI9 304 aa13.81□□□□□ -0.2
CUX1-211ENST00000546411 AQP7P3A6NL99 342 aa13.81□□□□□ -0.2
CUX1-211ENST00000546411 KIR2DS4P43632 304 aa13.81□□□□□ -0.2
CUX1-211ENST00000546411 PDZK1IP1Q13113 114 aa13.81□□□□□ -0.2
CUX1-211ENST00000546411 KIR2DS1Q14954 304 aa13.81□□□□□ -0.2
CUX1-211ENST00000546411 RAB35Q15286 201 aa13.81□□□□□ -0.2
CUX1-211ENST00000546411 OR1S2Q8NGQ3 325 aa13.81□□□□□ -0.2
CUX1-211ENST00000546411 INTS12Q96CB8 462 aaKnown RBP13.81□□□□□ -0.2
CUX1-211ENST00000546411 NPAS1Q99742 590 aa13.81□□□□□ -0.2
CUX1-211ENST00000546411 ZFP92A6NM28 416 aa13.81□□□□□ -0.2
CUX1-211ENST00000546411 VSTM5A8MXK1 200 aa13.81□□□□□ -0.2
CUX1-211ENST00000546411 GPR137BO60478 399 aa13.81□□□□□ -0.2
CUX1-211ENST00000546411 LYPD3O95274 346 aa13.81□□□□□ -0.2
CUX1-211ENST00000546411 TAGLNQ01995 201 aaKnown RBP13.81□□□□□ -0.2
CUX1-211ENST00000546411 TBC1D28Q2M2D7 210 aa13.81□□□□□ -0.2
CUX1-211ENST00000546411 CLEC18BQ6UXF7 455 aa13.81□□□□□ -0.2
CUX1-211ENST00000546411 SNIP1Q8TAD8 396 aaKnown RBP13.81□□□□□ -0.2
CUX1-211ENST00000546411 HAS2Q92819 552 aa13.81□□□□□ -0.2
CUX1-211ENST00000546411 KCNK17Q96T54 332 aa13.81□□□□□ -0.2
CUX1-211ENST00000546411 UNKLQ9H9P5 680 aaKnown RBP13.81□□□□□ -0.2
CUX1-211ENST00000546411 VSIG4Q9Y279 399 aa13.81□□□□□ -0.2
CUX1-211ENST00000546411 KLF13Q9Y2Y9 288 aaPredicted RBP13.81□□□□□ -0.2
CUX1-211ENST00000546411 FUT3P21217 361 aa13.81□□□□□ -0.2
CUX1-211ENST00000546411 TESK1Q15569 626 aa13.81□□□□□ -0.2
CUX1-211ENST00000546411 HAGHQ16775 308 aa13.81□□□□□ -0.2
CUX1-211ENST00000546411 PNLIPRP3Q17RR3 467 aa13.81□□□□□ -0.2
CUX1-211ENST00000546411 APCDD1LQ8NCL9 501 aa13.81□□□□□ -0.2
CUX1-211ENST00000546411 DEFB108BQ8NET1 73 aa13.81□□□□□ -0.2
CUX1-211ENST00000546411 OR5AP2Q8NGF4 316 aa13.81□□□□□ -0.2
CUX1-211ENST00000546411 SPSB1Q96BD6 273 aa13.81□□□□□ -0.2
CUX1-211ENST00000546411 PURGQ9UJV8 347 aaKnown RBP13.81□□□□□ -0.2
CUX1-211ENST00000546411 COLQQ9Y215 455 aaPredicted RBP13.81□□□□□ -0.2
CUX1-211ENST00000546411 GEMIN2O14893 280 aaKnown RBP13.8□□□□□ -0.2
CUX1-211ENST00000546411 IRF2P14316 349 aa13.8□□□□□ -0.2
CUX1-211ENST00000546411 FUT6P51993 359 aa13.8□□□□□ -0.2
CUX1-211ENST00000546411 ADPRHL1Q8NDY3 354 aa13.8□□□□□ -0.2
CUX1-211ENST00000546411 CT55Q8WUE5 264 aa13.8□□□□□ -0.2
CUX1-211ENST00000546411 C14orf79Q96F83 325 aa13.8□□□□□ -0.2
CUX1-211ENST00000546411 SOX7Q9BT81 388 aa13.8□□□□□ -0.2
CUX1-211ENST00000546411 FANCFQ9NPI8 374 aa13.8□□□□□ -0.2
CUX1-211ENST00000546411 JTBO76095 146 aa13.8□□□□□ -0.2
CUX1-211ENST00000546411 ELLP55199 621 aaPredicted RBP13.8□□□□□ -0.2
CUX1-211ENST00000546411 ZFP62Q8NB50 900 aaPredicted RBP13.8□□□□□ -0.2
CUX1-211ENST00000546411 OR10Z1Q8NGY1 313 aa13.8□□□□□ -0.2
CUX1-211ENST00000546411 ONECUT2O95948 504 aa13.8□□□□□ -0.2
CUX1-211ENST00000546411 IAPPP10997 89 aa13.8□□□□□ -0.2
CUX1-211ENST00000546411 CA6P23280 308 aa13.8□□□□□ -0.2
CUX1-211ENST00000546411 FPR2P25090 351 aa13.8□□□□□ -0.2
CUX1-211ENST00000546411 SRD5A2P31213 254 aa13.8□□□□□ -0.2
CUX1-211ENST00000546411 H2BFSP57053 126 aa13.8□□□□□ -0.2
CUX1-211ENST00000546411 UBE2KP61086 200 aa13.8□□□□□ -0.2
CUX1-211ENST00000546411 ROM1Q03395 351 aa13.8□□□□□ -0.2
CUX1-211ENST00000546411 DMBX1Q8NFW5 382 aa13.8□□□□□ -0.2
CUX1-211ENST00000546411 TAAR9Q96RI9 348 aa13.8□□□□□ -0.2
CUX1-211ENST00000546411 SPACA1Q9HBV2 294 aa13.8□□□□□ -0.2
CUX1-211ENST00000546411 SHISA7A6NL88 538 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 IFNA1P01562 189 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 RPS16P62249 146 aaKnown RBP13.79□□□□□ -0.2
CUX1-211ENST00000546411 SPANXN5Q5MJ07 72 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms