RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 IGKV1D-8A0A087WSZ0 117 aa12.52□□□□□ -0.4
CLIP1-216ENST00000541410 FAM221AA4D161 298 aa12.52□□□□□ -0.4
CLIP1-216ENST00000541410 FOXI3A8MTJ6 420 aaPredicted RBP12.52□□□□□ -0.4
CLIP1-216ENST00000541410 CDK2AP1O14519 115 aa12.52□□□□□ -0.4
CLIP1-216ENST00000541410 CEACAM4O75871 244 aa12.52□□□□□ -0.4
CLIP1-216ENST00000541410 APLNRP35414 380 aa12.52□□□□□ -0.4
CLIP1-216ENST00000541410 NPBWR2P48146 333 aa12.52□□□□□ -0.4
CLIP1-216ENST00000541410 IDH3GP51553 393 aaPredicted RBP12.52□□□□□ -0.4
CLIP1-216ENST00000541410 H2BFSP57053 126 aa12.52□□□□□ -0.4
CLIP1-216ENST00000541410 PRDX4Q13162 271 aa12.52□□□□□ -0.4
CLIP1-216ENST00000541410 ZNF169Q14929 603 aaPredicted RBP12.52□□□□□ -0.4
CLIP1-216ENST00000541410 LIN54Q6MZP7 749 aa12.52□□□□□ -0.4
CLIP1-216ENST00000541410 LHFPL2Q6ZUX7 228 aa12.52□□□□□ -0.4
CLIP1-216ENST00000541410 RFPL4BQ6ZWI9 263 aa12.52□□□□□ -0.4
CLIP1-216ENST00000541410 SLC25A26Q70HW3 274 aa12.52□□□□□ -0.4
CLIP1-216ENST00000541410 LIX1LQ8IVB5 337 aa12.52□□□□□ -0.4
CLIP1-216ENST00000541410 FBXL14Q8N1E6 418 aa12.52□□□□□ -0.4
CLIP1-216ENST00000541410 APOBEC3DQ96AK3 386 aaPredicted RBP12.52□□□□□ -0.4
CLIP1-216ENST00000541410 Q96M66 194 aa12.52□□□□□ -0.4
CLIP1-216ENST00000541410 FN3KRPQ9HA64 309 aa12.52□□□□□ -0.4
CLIP1-216ENST00000541410 PIPOXQ9P0Z9 390 aa12.52□□□□□ -0.4
CLIP1-216ENST00000541410 PLEKHA6Q9Y2H5 1048 aa12.52□□□□□ -0.4
CLIP1-216ENST00000541410 UBE2QL1A1L167 161 aa12.52□□□□□ -0.41
CLIP1-216ENST00000541410 ZNF205O95201 554 aa12.52□□□□□ -0.41
CLIP1-216ENST00000541410 SERPINA5P05154 406 aa12.52□□□□□ -0.41
CLIP1-216ENST00000541410 PI3P19957 117 aa12.52□□□□□ -0.41
CLIP1-216ENST00000541410 ATP1B3P54709 279 aa12.52□□□□□ -0.41
CLIP1-216ENST00000541410 PDZK1IP1Q13113 114 aa12.52□□□□□ -0.41
CLIP1-216ENST00000541410 BAMBIQ13145 260 aa12.52□□□□□ -0.41
CLIP1-216ENST00000541410 MEF2DQ14814 521 aa12.52□□□□□ -0.41
CLIP1-216ENST00000541410 C3P1Q6ZMU1 363 aa12.52□□□□□ -0.41
CLIP1-216ENST00000541410 ZNF611Q8N823 705 aa12.52□□□□□ -0.41
CLIP1-216ENST00000541410 ADAD2Q8NCV1 583 aaKnown RBP12.52□□□□□ -0.41
CLIP1-216ENST00000541410 SLC30A7Q8NEW0 376 aa12.52□□□□□ -0.41
CLIP1-216ENST00000541410 MARCH1Q8TCQ1 289 aa12.52□□□□□ -0.41
CLIP1-216ENST00000541410 NUDT16L1Q9BRJ7 211 aaKnown RBP12.52□□□□□ -0.41
CLIP1-216ENST00000541410 EIF3KQ9UBQ5 218 aaKnown RBP12.52□□□□□ -0.41
CLIP1-216ENST00000541410 ZNF391Q9UJN7 358 aa12.52□□□□□ -0.41
CLIP1-216ENST00000541410 SNRPGP15A8MWD9 76 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 SS18L1O75177 396 aaPredicted RBP12.51□□□□□ -0.41
CLIP1-216ENST00000541410 AMY2BP19961 511 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 NPY4RP50391 375 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 FUT6P51993 359 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 MALLQ13021 153 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 C11orf88Q6PI97 169 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 FAM214BQ7L5A3 538 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 ZGRF1Q86YA3 2104 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 ST8SIA4Q92187 359 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 WBP1Q96G27 269 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 MED30Q96HR3 178 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 PRRT1Q99946 306 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 SLC25A21Q9BQT8 299 aaPredicted RBP12.51□□□□□ -0.41
CLIP1-216ENST00000541410 TM2D1Q9BX74 207 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 ARID1AO14497 2285 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 IGHV3-64DA0A0J9YX35 117 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 F8VVB4 439 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 F8VWA3 439 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 AQP7O14520 342 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 MSTNO14793 375 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 AGFG2O95081 481 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 ZNF35P13682 527 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 AKR1C4P17516 323 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 KIR2DL2P43627 348 aaPredicted RBP12.51□□□□□ -0.41
CLIP1-216ENST00000541410 HAAOP46952 286 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 ERVS71-1P61550 626 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 TSPAN5P62079 268 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 CSNK2A3Q8NEV1 391 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 OR2AK2Q8NG84 335 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 HPSE2Q8WWQ2 592 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 HS3ST6Q96QI5 342 aa12.51□□□□□ -0.41
CLIP1-216ENST00000541410 RANBP3Q9H6Z4 567 aaPredicted RBP12.51□□□□□ -0.41
CLIP1-216ENST00000541410 HLA-AP01891 365 aaKnown RBP12.5□□□□□ -0.41
CLIP1-216ENST00000541410 OPRM1P35372 400 aa12.5□□□□□ -0.41
CLIP1-216ENST00000541410 DHRS2Q13268 280 aa12.5□□□□□ -0.41
CLIP1-216ENST00000541410 OR2T2Q6IF00 324 aa12.5□□□□□ -0.41
CLIP1-216ENST00000541410 SNIP1Q8TAD8 396 aaKnown RBP12.5□□□□□ -0.41
CLIP1-216ENST00000541410 SLAMF9Q96A28 289 aa12.5□□□□□ -0.41
CLIP1-216ENST00000541410 SARAFQ96BY9 339 aa12.5□□□□□ -0.41
CLIP1-216ENST00000541410 ATPIF1Q9UII2 106 aa12.5□□□□□ -0.41
CLIP1-216ENST00000541410 ZNF107Q9UII5 783 aaPredicted RBP12.5□□□□□ -0.41
CLIP1-216ENST00000541410 ST3GAL6Q9Y274 331 aa12.5□□□□□ -0.41
CLIP1-216ENST00000541410 NPTNQ9Y639 398 aa12.5□□□□□ -0.41
CLIP1-216ENST00000541410 RGS13O14921 159 aa12.5□□□□□ -0.41
CLIP1-216ENST00000541410 NOS1APO75052 506 aaPredicted RBP12.5□□□□□ -0.41
CLIP1-216ENST00000541410 COX5BP10606 129 aa12.5□□□□□ -0.41
CLIP1-216ENST00000541410 PPP1R1AQ13522 171 aa12.5□□□□□ -0.41
CLIP1-216ENST00000541410 STK11Q15831 433 aa12.5□□□□□ -0.41
CLIP1-216ENST00000541410 PNLIPRP3Q17RR3 467 aa12.5□□□□□ -0.41
CLIP1-216ENST00000541410 RPRMLQ8N4K4 120 aa12.5□□□□□ -0.41
CLIP1-216ENST00000541410 OR5H2Q8NGV7 314 aa12.5□□□□□ -0.41
CLIP1-216ENST00000541410 CASTOR1Q8WTX7 329 aa12.5□□□□□ -0.41
CLIP1-216ENST00000541410 ZNF75AQ96N20 296 aa12.5□□□□□ -0.41
CLIP1-216ENST00000541410 SULT4A1Q9BR01 284 aa12.5□□□□□ -0.41
CLIP1-216ENST00000541410 OCSTAMPQ9BR26 566 aa12.5□□□□□ -0.41
CLIP1-216ENST00000541410 IL36RNQ9UBH0 155 aa12.5□□□□□ -0.41
CLIP1-216ENST00000541410 SLC23A1Q9UHI7 598 aa12.5□□□□□ -0.41
CLIP1-216ENST00000541410 FIGNL2A6NMB9 653 aa12.49□□□□□ -0.41
CLIP1-216ENST00000541410 CD300LBA8K4G0 201 aa12.49□□□□□ -0.41
CLIP1-216ENST00000541410 CCSO14618 274 aa12.49□□□□□ -0.41
CLIP1-216ENST00000541410 ZNF780AO75290 641 aaPredicted RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms