RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 ITLN1Q8WWA0 313 aa8.9□□□□□ -0.98
VPS33A-204ENST00000540669 FOXRED1Q96CU9 486 aaPredicted RBP8.9□□□□□ -0.98
VPS33A-204ENST00000540669 BORCS8Q96FH0 119 aa8.9□□□□□ -0.98
VPS33A-204ENST00000540669 CPNE2Q96FN4 548 aaPredicted RBP8.9□□□□□ -0.98
VPS33A-204ENST00000540669 SPACA5Q96QH8 159 aa8.9□□□□□ -0.98
VPS33A-204ENST00000540669 NRIP2Q9BQI9 281 aa8.9□□□□□ -0.98
VPS33A-204ENST00000540669 CACNG6Q9BXT2 260 aa8.9□□□□□ -0.98
VPS33A-204ENST00000540669 CXorf56Q9H5V9 222 aa8.9□□□□□ -0.98
VPS33A-204ENST00000540669 CNTD2Q9H8S5 307 aa8.9□□□□□ -0.98
VPS33A-204ENST00000540669 GCM1Q9NP62 436 aa8.9□□□□□ -0.98
VPS33A-204ENST00000540669 C14orf119Q9NWQ9 140 aa8.9□□□□□ -0.98
VPS33A-204ENST00000540669 AK6Q9Y3D8 172 aaKnown RBP8.9□□□□□ -0.98
VPS33A-204ENST00000540669 ARID1AO14497 2285 aa8.9□□□□□ -0.98
VPS33A-204ENST00000540669 ZANQ9Y493 2812 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 TMEM14DPA8MWL7 114 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 ZNF732B4DXR9 585 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 PDCD5O14737 125 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 SYNGR1O43759 233 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 KDM4BO94953 1096 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 HPXP02790 462 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 MAS1P04201 325 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 ZNF93P35789 620 aaPredicted RBP8.89□□□□□ -0.99
VPS33A-204ENST00000540669 OR3A4PP47883 348 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 SERPINB10P48595 397 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 SRP9P49458 86 aaKnown RBP8.89□□□□□ -0.99
VPS33A-204ENST00000540669 PSMD7P51665 324 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 TNFAIP6P98066 277 aaPredicted RBP8.89□□□□□ -0.99
VPS33A-204ENST00000540669 MZT1Q08AG7 82 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 PDZK1IP1Q13113 114 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 PRAMEF6Q5VXH4 476 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 ELP2Q6IA86 826 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 C1QL2Q7Z5L3 287 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 CROCCP3Q8IVE0 287 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 GCSAMQ8N6F7 178 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 POC1AQ8NBT0 407 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 SCCPDHQ8NBX0 429 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 OR8S1Q8NH09 359 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 NPRL2Q8WTW4 380 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 MBD6Q96DN6 1003 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 RNF170Q96K19 258 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 GSX2Q9BZM3 304 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 SLITRK2Q9H156 845 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 LIME1Q9H400 295 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 SEBOXQ9HB31 216 aaPredicted RBP8.89□□□□□ -0.99
VPS33A-204ENST00000540669 RHOFQ9HBH0 211 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 NEK6Q9HC98 313 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 DYNLRB1Q9NP97 96 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 MTCH1Q9NZJ7 389 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 SLC7A11Q9UPY5 501 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 LAMP3Q9UQV4 416 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 A3GALT2U3KPV4 340 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 V9GY05 133 aa8.89□□□□□ -0.99
VPS33A-204ENST00000540669 FOXI3A8MTJ6 420 aaPredicted RBP8.88□□□□□ -0.99
VPS33A-204ENST00000540669 F8VVB4 439 aa8.88□□□□□ -0.99
VPS33A-204ENST00000540669 F8VWA3 439 aa8.88□□□□□ -0.99
VPS33A-204ENST00000540669 IFNL4K9M1U5 179 aa8.88□□□□□ -0.99
VPS33A-204ENST00000540669 SPRY3O43610 288 aa8.88□□□□□ -0.99
VPS33A-204ENST00000540669 RHBDL1O75783 438 aa8.88□□□□□ -0.99
VPS33A-204ENST00000540669 BPNT1O95861 308 aa8.88□□□□□ -0.99
VPS33A-204ENST00000540669 UBBP0CG47 229 aa8.88□□□□□ -0.99
VPS33A-204ENST00000540669 PTGFRP43088 359 aa8.88□□□□□ -0.99
VPS33A-204ENST00000540669 HAAOP46952 286 aa8.88□□□□□ -0.99
VPS33A-204ENST00000540669 ART1P52961 327 aa8.88□□□□□ -0.99
VPS33A-204ENST00000540669 ATP1B3P54709 279 aa8.88□□□□□ -0.99
VPS33A-204ENST00000540669 MTCP1P56278 107 aa8.88□□□□□ -0.99
VPS33A-204ENST00000540669 CAV3P56539 151 aa8.88□□□□□ -0.99
VPS33A-204ENST00000540669 UNC119Q13432 240 aa8.88□□□□□ -0.99
VPS33A-204ENST00000540669 DGUOKQ16854 277 aa8.88□□□□□ -0.99
VPS33A-204ENST00000540669 GLT8D1Q68CQ7 371 aa8.88□□□□□ -0.99
VPS33A-204ENST00000540669 BIVMQ86UB2 503 aa8.88□□□□□ -0.99
VPS33A-204ENST00000540669 TGIF2LYQ8IUE0 185 aa8.88□□□□□ -0.99
VPS33A-204ENST00000540669 OR51T1Q8NGJ9 327 aa8.88□□□□□ -0.99
VPS33A-204ENST00000540669 TRMT10AQ8TBZ6 339 aaKnown RBP8.88□□□□□ -0.99
VPS33A-204ENST00000540669 NEU4Q8WWR8 484 aaPredicted RBP8.88□□□□□ -0.99
VPS33A-204ENST00000540669 YIPF5Q969M3 257 aa8.88□□□□□ -0.99
VPS33A-204ENST00000540669 PTX4Q96A99 478 aa8.88□□□□□ -0.99
VPS33A-204ENST00000540669 NKX3-1Q99801 234 aaPredicted RBP8.88□□□□□ -0.99
VPS33A-204ENST00000540669 TPK1Q9H3S4 243 aa8.88□□□□□ -0.99
VPS33A-204ENST00000540669 SAP30LQ9HAJ7 183 aa8.88□□□□□ -0.99
VPS33A-204ENST00000540669 BEX4Q9NWD9 120 aaPredicted RBP8.88□□□□□ -0.99
VPS33A-204ENST00000540669 GHRLQ9UBU3 117 aa8.88□□□□□ -0.99
VPS33A-204ENST00000540669 PLEKHA6Q9Y2H5 1048 aa8.88□□□□□ -0.99
VPS33A-204ENST00000540669 TEX15Q9BXT5 2789 aa8.88□□□□□ -0.99
VPS33A-204ENST00000540669 NOTCH2Q04721 2471 aa8.87□□□□□ -0.99
VPS33A-204ENST00000540669 A0A075B6Q4 140 aa8.87□□□□□ -0.99
VPS33A-204ENST00000540669 FAM230AA0A1W2PPH8 454 aa8.87□□□□□ -0.99
VPS33A-204ENST00000540669 RNF223E7ERA6 249 aa8.87□□□□□ -0.99
VPS33A-204ENST00000540669 NDUFS7O75251 213 aa8.87□□□□□ -0.99
VPS33A-204ENST00000540669 IGHV4-39P01824 125 aa8.87□□□□□ -0.99
VPS33A-204ENST00000540669 HCKP08631 526 aa8.87□□□□□ -0.99
VPS33A-204ENST00000540669 VSIG8P0DPA2 414 aa8.87□□□□□ -0.99
VPS33A-204ENST00000540669 CALCBP10092 127 aa8.87□□□□□ -0.99
VPS33A-204ENST00000540669 SLC2A2P11168 524 aaPredicted RBP8.87□□□□□ -0.99
VPS33A-204ENST00000540669 ZNF182P17025 639 aaPredicted RBP8.87□□□□□ -0.99
VPS33A-204ENST00000540669 EGR1P18146 543 aa8.87□□□□□ -0.99
VPS33A-204ENST00000540669 TNFRSF1AP19438 455 aa8.87□□□□□ -0.99
VPS33A-204ENST00000540669 TNFSF4P23510 183 aa8.87□□□□□ -0.99
VPS33A-204ENST00000540669 HTR2CP28335 458 aa8.87□□□□□ -0.99
VPS33A-204ENST00000540669 CDKN1AP38936 164 aa8.87□□□□□ -0.99
VPS33A-204ENST00000540669 CAPZA1P52907 286 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms