RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 RPL36Q9Y3U8 105 aaKnown RBP12.46□□□□□ -0.42
UBE3B-212ENST00000540230 FAM230AA0A1W2PPH8 454 aa12.45□□□□□ -0.42
UBE3B-212ENST00000540230 PLATP00750 562 aa12.45□□□□□ -0.42
UBE3B-212ENST00000540230 GNAO1P09471 354 aa12.45□□□□□ -0.42
UBE3B-212ENST00000540230 LIMS3P0CW19 117 aa12.45□□□□□ -0.42
UBE3B-212ENST00000540230 LIMS4P0CW20 117 aa12.45□□□□□ -0.42
UBE3B-212ENST00000540230 PGA5P0DJD9 388 aa12.45□□□□□ -0.42
UBE3B-212ENST00000540230 PPIAL4GP0DN37 164 aa12.45□□□□□ -0.42
UBE3B-212ENST00000540230 SCGB2A2Q13296 93 aa12.45□□□□□ -0.42
UBE3B-212ENST00000540230 ALKBH1Q13686 389 aaKnown RBP12.45□□□□□ -0.42
UBE3B-212ENST00000540230 TMEM244Q5VVB8 128 aa12.45□□□□□ -0.42
UBE3B-212ENST00000540230 CD276Q5ZPR3 534 aa12.45□□□□□ -0.42
UBE3B-212ENST00000540230 ACP7Q6ZNF0 438 aa12.45□□□□□ -0.42
UBE3B-212ENST00000540230 ZNF573Q86YE8 665 aa12.45□□□□□ -0.42
UBE3B-212ENST00000540230 SYS1Q8N2H4 156 aa12.45□□□□□ -0.42
UBE3B-212ENST00000540230 DHRSXQ8N5I4 330 aa12.45□□□□□ -0.42
UBE3B-212ENST00000540230 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.45□□□□□ -0.42
UBE3B-212ENST00000540230 SPATA3Q8NHX4 192 aa12.45□□□□□ -0.42
UBE3B-212ENST00000540230 ZNF671Q8TAW3 534 aa12.45□□□□□ -0.42
UBE3B-212ENST00000540230 TMIGD2Q96BF3 282 aa12.45□□□□□ -0.42
UBE3B-212ENST00000540230 TBX15Q96SF7 602 aa12.45□□□□□ -0.42
UBE3B-212ENST00000540230 PCGF1Q9BSM1 259 aa12.45□□□□□ -0.42
UBE3B-212ENST00000540230 ELL3Q9HB65 397 aaPredicted RBP12.45□□□□□ -0.42
UBE3B-212ENST00000540230 RPUSD1Q9UJJ7 312 aaKnown RBP12.45□□□□□ -0.42
UBE3B-212ENST00000540230 MAB21L2Q9Y586 359 aa12.45□□□□□ -0.42
UBE3B-212ENST00000540230 STAB1Q9NY15 2570 aa12.44□□□□□ -0.42
UBE3B-212ENST00000540230 IGKV1-9A0A0C4DH69 117 aa12.44□□□□□ -0.42
UBE3B-212ENST00000540230 ZNF879B4DU55 563 aa12.44□□□□□ -0.42
UBE3B-212ENST00000540230 SIGLEC5O15389 551 aa12.44□□□□□ -0.42
UBE3B-212ENST00000540230 ISG15P05161 165 aa12.44□□□□□ -0.42
UBE3B-212ENST00000540230 MPZP25189 248 aa12.44□□□□□ -0.42
UBE3B-212ENST00000540230 GABRA2P47869 451 aa12.44□□□□□ -0.42
UBE3B-212ENST00000540230 CEBPDP49716 269 aaPredicted RBP12.44□□□□□ -0.42
UBE3B-212ENST00000540230 CCR9P51686 369 aa12.44□□□□□ -0.42
UBE3B-212ENST00000540230 ARF6P62330 175 aa12.44□□□□□ -0.42
UBE3B-212ENST00000540230 GABPB1Q06547 395 aaPredicted RBP12.44□□□□□ -0.42
UBE3B-212ENST00000540230 TTC23Q5W5X9 447 aa12.44□□□□□ -0.42
UBE3B-212ENST00000540230 BRD3OSQ6XYD6 125 aa12.44□□□□□ -0.42
UBE3B-212ENST00000540230 USP43Q70EL4 1123 aa12.44□□□□□ -0.42
UBE3B-212ENST00000540230 SIGLECL1Q8N7X8 197 aa12.44□□□□□ -0.42
UBE3B-212ENST00000540230 ZDHHC22Q8N966 263 aa12.44□□□□□ -0.42
UBE3B-212ENST00000540230 ZNRF1Q8ND25 227 aa12.44□□□□□ -0.42
UBE3B-212ENST00000540230 FGGYQ96C11 551 aa12.44□□□□□ -0.42
UBE3B-212ENST00000540230 SIRPDQ9H106 197 aa12.44□□□□□ -0.42
UBE3B-212ENST00000540230 DNTTIP1Q9H147 329 aa12.44□□□□□ -0.42
UBE3B-212ENST00000540230 FGF20Q9NP95 211 aaPredicted RBP12.44□□□□□ -0.42
UBE3B-212ENST00000540230 C8orf4Q9NR00 106 aa12.44□□□□□ -0.42
UBE3B-212ENST00000540230 INPP5EQ9NRR6 644 aa12.44□□□□□ -0.42
UBE3B-212ENST00000540230 A0A0A6YYJ9 748 aa12.43□□□□□ -0.42
UBE3B-212ENST00000540230 MDFIC2A0A1B0GVS7 189 aa12.43□□□□□ -0.42
UBE3B-212ENST00000540230 ERICH4A6NGS2 130 aa12.43□□□□□ -0.42
UBE3B-212ENST00000540230 NKX6-3A6NJ46 265 aa12.43□□□□□ -0.42
UBE3B-212ENST00000540230 F8VVB4 439 aa12.43□□□□□ -0.42
UBE3B-212ENST00000540230 F8VWA3 439 aa12.43□□□□□ -0.42
UBE3B-212ENST00000540230 NDUFB3O43676 98 aa12.43□□□□□ -0.42
UBE3B-212ENST00000540230 ACAA1P09110 424 aaPredicted RBP12.43□□□□□ -0.42
UBE3B-212ENST00000540230 ETV1P50549 477 aa12.43□□□□□ -0.42
UBE3B-212ENST00000540230 GTF2A1P52655 376 aaPredicted RBP12.43□□□□□ -0.42
UBE3B-212ENST00000540230 IL13RA1P78552 427 aa12.43□□□□□ -0.42
UBE3B-212ENST00000540230 KLHL22Q53GT1 634 aa12.43□□□□□ -0.42
UBE3B-212ENST00000540230 RUSC1-AS1Q66K80 236 aa12.43□□□□□ -0.42
UBE3B-212ENST00000540230 XAF1Q6GPH4 301 aa12.43□□□□□ -0.42
UBE3B-212ENST00000540230 LAIR2Q6ISS4 152 aa12.43□□□□□ -0.42
UBE3B-212ENST00000540230 RNF144BQ7Z419 303 aa12.43□□□□□ -0.42
UBE3B-212ENST00000540230 CD177Q8N6Q3 437 aa12.43□□□□□ -0.42
UBE3B-212ENST00000540230 PNLDC1Q8NA58 520 aaKnown RBP12.43□□□□□ -0.42
UBE3B-212ENST00000540230 LY6G5BQ8NDX9 201 aa12.43□□□□□ -0.42
UBE3B-212ENST00000540230 CCDC54Q8NEL0 328 aa12.43□□□□□ -0.42
UBE3B-212ENST00000540230 C1orf147Q96MC9 270 aaPredicted RBP12.43□□□□□ -0.42
UBE3B-212ENST00000540230 WDFY2Q96P53 400 aa12.43□□□□□ -0.42
UBE3B-212ENST00000540230 NRIP2Q9BQI9 281 aa12.43□□□□□ -0.42
UBE3B-212ENST00000540230 DCTN5Q9BTE1 182 aa12.43□□□□□ -0.42
UBE3B-212ENST00000540230 SUCNR1Q9BXA5 334 aa12.43□□□□□ -0.42
UBE3B-212ENST00000540230 HES4Q9HCC6 221 aa12.43□□□□□ -0.42
UBE3B-212ENST00000540230 SLC7A11Q9UPY5 501 aa12.43□□□□□ -0.42
UBE3B-212ENST00000540230 RFPL4AA6NLU0 287 aa12.42□□□□□ -0.42
UBE3B-212ENST00000540230 RFPL4AL1F8VTS6 287 aa12.42□□□□□ -0.42
UBE3B-212ENST00000540230 NOS1APO75052 506 aaPredicted RBP12.42□□□□□ -0.42
UBE3B-212ENST00000540230 GATBO75879 557 aaKnown RBP12.42□□□□□ -0.42
UBE3B-212ENST00000540230 TOX4O94842 621 aa12.42□□□□□ -0.42
UBE3B-212ENST00000540230 INMTO95050 263 aa12.42□□□□□ -0.42
UBE3B-212ENST00000540230 ZFPL1O95159 310 aa12.42□□□□□ -0.42
UBE3B-212ENST00000540230 ECDO95905 644 aaPredicted RBP12.42□□□□□ -0.42
UBE3B-212ENST00000540230 LIPFP07098 398 aa12.42□□□□□ -0.42
UBE3B-212ENST00000540230 FPR2P25090 351 aa12.42□□□□□ -0.42
UBE3B-212ENST00000540230 CAPGP40121 348 aa12.42□□□□□ -0.42
UBE3B-212ENST00000540230 DLX1P56177 255 aa12.42□□□□□ -0.42
UBE3B-212ENST00000540230 ERVK11-1P61568 191 aa12.42□□□□□ -0.42
UBE3B-212ENST00000540230 PRB3Q04118 309 aaPredicted RBP12.42□□□□□ -0.42
UBE3B-212ENST00000540230 LRRC10Q5BKY1 277 aa12.42□□□□□ -0.42
UBE3B-212ENST00000540230 OR2G6Q5TZ20 316 aa12.42□□□□□ -0.42
UBE3B-212ENST00000540230 ZNF676Q8N7Q3 588 aa12.42□□□□□ -0.42
UBE3B-212ENST00000540230 PP6455Q8WZ26 134 aa12.42□□□□□ -0.42
UBE3B-212ENST00000540230 H1FXQ92522 213 aaKnown RBP12.42□□□□□ -0.42
UBE3B-212ENST00000540230 C10orf35Q96D05 121 aa12.42□□□□□ -0.42
UBE3B-212ENST00000540230 DUX5Q96PT3 197 aa12.42□□□□□ -0.42
UBE3B-212ENST00000540230 PDCD1LG2Q9BQ51 273 aa12.42□□□□□ -0.42
UBE3B-212ENST00000540230 JAM3Q9BX67 310 aa12.42□□□□□ -0.42
UBE3B-212ENST00000540230 MS4A7Q9GZW8 240 aaPredicted RBP12.42□□□□□ -0.42
UBE3B-212ENST00000540230 MTCH1Q9NZJ7 389 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms