RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 RIPPLY1Q0D2K3 151 aa10.96□□□□□ -0.65
SS18-204ENST00000539244 HABP2Q14520 560 aaPredicted RBP10.96□□□□□ -0.65
SS18-204ENST00000539244 ZNF273Q14593 569 aa10.96□□□□□ -0.65
SS18-204ENST00000539244 CNN3Q15417 329 aaKnown RBP10.96□□□□□ -0.65
SS18-204ENST00000539244 NSUN5P1Q3KNT7 163 aa10.96□□□□□ -0.65
SS18-204ENST00000539244 CCBE1Q6UXH8 406 aaPredicted RBP10.96□□□□□ -0.65
SS18-204ENST00000539244 KRT77Q7Z794 578 aa10.96□□□□□ -0.65
SS18-204ENST00000539244 LHFPL4Q7Z7J7 247 aa10.96□□□□□ -0.65
SS18-204ENST00000539244 LYG1Q8N1E2 194 aa10.96□□□□□ -0.65
SS18-204ENST00000539244 DYNAPQ8N1N2 210 aa10.96□□□□□ -0.65
SS18-204ENST00000539244 PHF21AQ96BD5 680 aa10.96□□□□□ -0.65
SS18-204ENST00000539244 FOXRED1Q96CU9 486 aaPredicted RBP10.96□□□□□ -0.65
SS18-204ENST00000539244 R3HDM4Q96D70 268 aa10.96□□□□□ -0.65
SS18-204ENST00000539244 NKX3-1Q99801 234 aaPredicted RBP10.96□□□□□ -0.65
SS18-204ENST00000539244 CITED2Q99967 270 aaPredicted RBP10.96□□□□□ -0.65
SS18-204ENST00000539244 TMEM269A0A1B0GVZ9 245 aa10.95□□□□□ -0.66
SS18-204ENST00000539244 ODF3BA8MYP8 253 aa10.95□□□□□ -0.66
SS18-204ENST00000539244 J3QT63 122 aa10.95□□□□□ -0.66
SS18-204ENST00000539244 RBP4P02753 201 aa10.95□□□□□ -0.66
SS18-204ENST00000539244 FAHP16930 419 aa10.95□□□□□ -0.66
SS18-204ENST00000539244 SLC2A5P22732 501 aa10.95□□□□□ -0.66
SS18-204ENST00000539244 COX7A1P24310 79 aa10.95□□□□□ -0.66
SS18-204ENST00000539244 DYNLT3P51808 116 aa10.95□□□□□ -0.66
SS18-204ENST00000539244 FAM98BQ52LJ0 330 aaKnown RBP10.95□□□□□ -0.66
SS18-204ENST00000539244 DMRTC1Q5HYR2 192 aa10.95□□□□□ -0.66
SS18-204ENST00000539244 LCN1P1Q5VSP4 162 aa10.95□□□□□ -0.66
SS18-204ENST00000539244 PLCXD3Q63HM9 321 aa10.95□□□□□ -0.66
SS18-204ENST00000539244 KCTD18Q6PI47 426 aaPredicted RBP10.95□□□□□ -0.66
SS18-204ENST00000539244 MOB3CQ70IA8 216 aa10.95□□□□□ -0.66
SS18-204ENST00000539244 ARHGAP24Q8N264 748 aa10.95□□□□□ -0.66
SS18-204ENST00000539244 WFDC9Q8NEX5 89 aa10.95□□□□□ -0.66
SS18-204ENST00000539244 OR2T27Q8NH04 317 aa10.95□□□□□ -0.66
SS18-204ENST00000539244 RPS4Y2Q8TD47 263 aa10.95□□□□□ -0.66
SS18-204ENST00000539244 GIPC3Q8TF64 312 aa10.95□□□□□ -0.66
SS18-204ENST00000539244 SGCDQ92629 289 aa10.95□□□□□ -0.66
SS18-204ENST00000539244 MALSU1Q96EH3 234 aa10.95□□□□□ -0.66
SS18-204ENST00000539244 NRIP2Q9BQI9 281 aa10.95□□□□□ -0.66
SS18-204ENST00000539244 YIPF3Q9GZM5 350 aa10.95□□□□□ -0.66
SS18-204ENST00000539244 HES4Q9HCC6 221 aa10.95□□□□□ -0.66
SS18-204ENST00000539244 NUFIP1Q9UHK0 495 aaKnown RBP10.95□□□□□ -0.66
SS18-204ENST00000539244 ENPP5Q9UJA9 477 aa10.95□□□□□ -0.66
SS18-204ENST00000539244 LAMP5Q9UJQ1 280 aa10.95□□□□□ -0.66
SS18-204ENST00000539244 PITPNC1Q9UKF7 332 aa10.95□□□□□ -0.66
SS18-204ENST00000539244 SYNGR1O43759 233 aa10.94□□□□□ -0.66
SS18-204ENST00000539244 DHRS3O75911 302 aa10.94□□□□□ -0.66
SS18-204ENST00000539244 TK1P04183 234 aa10.94□□□□□ -0.66
SS18-204ENST00000539244 HMGN1P05114 100 aa10.94□□□□□ -0.66
SS18-204ENST00000539244 CDK5Q00535 292 aa10.94□□□□□ -0.66
SS18-204ENST00000539244 ROM1Q03395 351 aa10.94□□□□□ -0.66
SS18-204ENST00000539244 GINS1Q14691 196 aa10.94□□□□□ -0.66
SS18-204ENST00000539244 LDLRAD2Q5SZI1 272 aa10.94□□□□□ -0.66
SS18-204ENST00000539244 ZNF626Q68DY1 528 aa10.94□□□□□ -0.66
SS18-204ENST00000539244 TMEM42Q69YG0 159 aa10.94□□□□□ -0.66
SS18-204ENST00000539244 ZNF782Q6ZMW2 699 aaPredicted RBP10.94□□□□□ -0.66
SS18-204ENST00000539244 DHFR2Q86XF0 187 aa10.94□□□□□ -0.66
SS18-204ENST00000539244 ZNF573Q86YE8 665 aa10.94□□□□□ -0.66
SS18-204ENST00000539244 CPOQ8IVL8 374 aa10.94□□□□□ -0.66
SS18-204ENST00000539244 OR11H6Q8NGC7 330 aa10.94□□□□□ -0.66
SS18-204ENST00000539244 OR4M1Q8NGD0 313 aa10.94□□□□□ -0.66
SS18-204ENST00000539244 OR13D1Q8NGV5 346 aa10.94□□□□□ -0.66
SS18-204ENST00000539244 ZNF488Q96MN9 340 aa10.94□□□□□ -0.66
SS18-204ENST00000539244 OR8B4Q96RC9 309 aa10.94□□□□□ -0.66
SS18-204ENST00000539244 MROQ9BYG7 248 aa10.94□□□□□ -0.66
SS18-204ENST00000539244 PRSS22Q9GZN4 317 aa10.94□□□□□ -0.66
SS18-204ENST00000539244 PBOV1Q9GZY1 135 aa10.94□□□□□ -0.66
SS18-204ENST00000539244 FAM107BQ9H098 131 aa10.94□□□□□ -0.66
SS18-204ENST00000539244 C1orf21Q9H246 121 aa10.94□□□□□ -0.66
SS18-204ENST00000539244 GPR84Q9NQS5 396 aa10.94□□□□□ -0.66
SS18-204ENST00000539244 TAS2R1Q9NYW7 299 aa10.94□□□□□ -0.66
SS18-204ENST00000539244 PIGLQ9Y2B2 252 aa10.94□□□□□ -0.66
SS18-204ENST00000539244 POLDIP2Q9Y2S7 368 aa10.94□□□□□ -0.66
SS18-204ENST00000539244 KMT2CQ8NEZ4 4911 aaKnown RBP10.93□□□□□ -0.66
SS18-204ENST00000539244 PQLC2LA1A4F0 135 aa10.93□□□□□ -0.66
SS18-204ENST00000539244 K7N7A8 449 aa10.93□□□□□ -0.66
SS18-204ENST00000539244 GSC2O15499 205 aa10.93□□□□□ -0.66
SS18-204ENST00000539244 ZNF254O75437 659 aa10.93□□□□□ -0.66
SS18-204ENST00000539244 NRASP01111 189 aa10.93□□□□□ -0.66
SS18-204ENST00000539244 RAP2AP10114 183 aa10.93□□□□□ -0.66
SS18-204ENST00000539244 MPZP25189 248 aa10.93□□□□□ -0.66
SS18-204ENST00000539244 HAAOP46952 286 aa10.93□□□□□ -0.66
SS18-204ENST00000539244 CEBPDP49716 269 aaPredicted RBP10.93□□□□□ -0.66
SS18-204ENST00000539244 RAB13P51153 203 aa10.93□□□□□ -0.66
SS18-204ENST00000539244 MNAT1P51948 309 aa10.93□□□□□ -0.66
SS18-204ENST00000539244 ERVK11-1P61568 191 aa10.93□□□□□ -0.66
SS18-204ENST00000539244 TRIM25Q14258 630 aaKnown RBP10.93□□□□□ -0.66
SS18-204ENST00000539244 ZNF684Q5T5D7 378 aa10.93□□□□□ -0.66
SS18-204ENST00000539244 FOXB2Q5VYV0 432 aa10.93□□□□□ -0.66
SS18-204ENST00000539244 ZNF679Q8IYX0 411 aa10.93□□□□□ -0.66
SS18-204ENST00000539244 BBS1Q8NFJ9 593 aa10.93□□□□□ -0.66
SS18-204ENST00000539244 OR51E1Q8TCB6 317 aa10.93□□□□□ -0.66
SS18-204ENST00000539244 TEAD3Q99594 435 aa10.93□□□□□ -0.66
SS18-204ENST00000539244 ABCB10Q9NRK6 738 aa10.93□□□□□ -0.66
SS18-204ENST00000539244 PRR32B1ATL7 298 aa10.92□□□□□ -0.66
SS18-204ENST00000539244 DLGAP1O14490 977 aa10.92□□□□□ -0.66
SS18-204ENST00000539244 E2F6O75461 281 aa10.92□□□□□ -0.66
SS18-204ENST00000539244 NXPH2O95156 264 aa10.92□□□□□ -0.66
SS18-204ENST00000539244 ARG1P05089 322 aa10.92□□□□□ -0.66
SS18-204ENST00000539244 OSMP13725 252 aa10.92□□□□□ -0.66
SS18-204ENST00000539244 HCCSP53701 268 aa10.92□□□□□ -0.66
SS18-204ENST00000539244 CD83Q01151 205 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms