RNA–Protein interactions for RNA: ENST00000538333.3

LIMK1-208, Transcript of LIM domain kinase 1, humanhuman

TSL 2 BASIC

Gene LIMK1, Length 2,170 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-208ENST00000538333 COMMD9Q9P000 198 aa12.15□□□□□ -0.46
LIMK1-208ENST00000538333 ZNF581Q9P0T4 197 aa12.15□□□□□ -0.46
LIMK1-208ENST00000538333 HSF4Q9ULV5 492 aa12.15□□□□□ -0.46
LIMK1-208ENST00000538333 IGKV1-12A0A0C4DH73 117 aa12.15□□□□□ -0.47
LIMK1-208ENST00000538333 A0A0D9SG52 128 aa12.15□□□□□ -0.47
LIMK1-208ENST00000538333 RNF222A6NCQ9 220 aa12.15□□□□□ -0.47
LIMK1-208ENST00000538333 XRCC2O43543 280 aa12.15□□□□□ -0.47
LIMK1-208ENST00000538333 NME2P1O60361 137 aa12.15□□□□□ -0.47
LIMK1-208ENST00000538333 SFT2D2O95562 160 aa12.15□□□□□ -0.47
LIMK1-208ENST00000538333 IGKV1D-12P01611 117 aa12.15□□□□□ -0.47
LIMK1-208ENST00000538333 SERPINA5P05154 406 aa12.15□□□□□ -0.47
LIMK1-208ENST00000538333 NME2P22392 152 aa12.15□□□□□ -0.47
LIMK1-208ENST00000538333 AP2S1P53680 142 aaPredicted RBP12.15□□□□□ -0.47
LIMK1-208ENST00000538333 FOXG1P55316 489 aaPredicted RBP12.15□□□□□ -0.47
LIMK1-208ENST00000538333 BAMBIQ13145 260 aa12.15□□□□□ -0.47
LIMK1-208ENST00000538333 RSU1Q15404 277 aa12.15□□□□□ -0.47
LIMK1-208ENST00000538333 AANATQ16613 207 aa12.15□□□□□ -0.47
LIMK1-208ENST00000538333 LRRC37A5PQ49AS3 106 aa12.15□□□□□ -0.47
LIMK1-208ENST00000538333 RFPL4BQ6ZWI9 263 aa12.15□□□□□ -0.47
LIMK1-208ENST00000538333 KCNRGQ8N5I3 272 aa12.15□□□□□ -0.47
LIMK1-208ENST00000538333 SCGB3A2Q96PL1 93 aa12.15□□□□□ -0.47
LIMK1-208ENST00000538333 HDHD3Q9BSH5 251 aaPredicted RBP12.15□□□□□ -0.47
LIMK1-208ENST00000538333 PPA2Q9H2U2 334 aa12.15□□□□□ -0.47
LIMK1-208ENST00000538333 RNF122Q9H9V4 155 aa12.15□□□□□ -0.47
LIMK1-208ENST00000538333 PARPBPQ9NWS1 579 aa12.15□□□□□ -0.47
LIMK1-208ENST00000538333 ARHGAP21Q5T5U3 1957 aa12.14□□□□□ -0.47
LIMK1-208ENST00000538333 FAM25EA8MYX2 175 aa12.14□□□□□ -0.47
LIMK1-208ENST00000538333 RRP8O43159 456 aaKnown RBP12.14□□□□□ -0.47
LIMK1-208ENST00000538333 OR2F2O95006 317 aa12.14□□□□□ -0.47
LIMK1-208ENST00000538333 SYNGR4O95473 234 aa12.14□□□□□ -0.47
LIMK1-208ENST00000538333 PLATP00750 562 aa12.14□□□□□ -0.47
LIMK1-208ENST00000538333 CSTBP04080 98 aaKnown RBP12.14□□□□□ -0.47
LIMK1-208ENST00000538333 SP1P08047 785 aa12.14□□□□□ -0.47
LIMK1-208ENST00000538333 RPS2P15880 293 aaKnown RBP12.14□□□□□ -0.47
LIMK1-208ENST00000538333 PI3P19957 117 aa12.14□□□□□ -0.47
LIMK1-208ENST00000538333 OR2F1Q13607 317 aa12.14□□□□□ -0.47
LIMK1-208ENST00000538333 TAF9Q16594 264 aa12.14□□□□□ -0.47
LIMK1-208ENST00000538333 NKAPLQ5M9Q1 402 aa12.14□□□□□ -0.47
LIMK1-208ENST00000538333 CLEC18BQ6UXF7 455 aa12.14□□□□□ -0.47
LIMK1-208ENST00000538333 ZSCAN4Q8NAM6 433 aaPredicted RBP12.14□□□□□ -0.47
LIMK1-208ENST00000538333 FER1L6-AS2Q96M78 137 aa12.14□□□□□ -0.47
LIMK1-208ENST00000538333 WDR13Q9H1Z4 485 aa12.14□□□□□ -0.47
LIMK1-208ENST00000538333 CALHM2Q9HA72 323 aa12.14□□□□□ -0.47
LIMK1-208ENST00000538333 ZNF701Q9NV72 531 aaPredicted RBP12.14□□□□□ -0.47
LIMK1-208ENST00000538333 IL36GQ9NZH8 169 aa12.14□□□□□ -0.47
LIMK1-208ENST00000538333 A0A0B4J2A0 478 aa12.13□□□□□ -0.47
LIMK1-208ENST00000538333 ZNF816-ZNF321PA0A0X1KG74 233 aa12.13□□□□□ -0.47
LIMK1-208ENST00000538333 ZNF724A8MTY0 619 aa12.13□□□□□ -0.47
LIMK1-208ENST00000538333 PDGFAP04085 211 aa12.13□□□□□ -0.47
LIMK1-208ENST00000538333 MEOX1P50221 254 aa12.13□□□□□ -0.47
LIMK1-208ENST00000538333 FUT6P51993 359 aa12.13□□□□□ -0.47
LIMK1-208ENST00000538333 PLGLB1Q02325 96 aa12.13□□□□□ -0.47
LIMK1-208ENST00000538333 CHRFAM7AQ494W8 412 aa12.13□□□□□ -0.47
LIMK1-208ENST00000538333 RGS7BPQ6MZT1 257 aaPredicted RBP12.13□□□□□ -0.47
LIMK1-208ENST00000538333 CCDC28AQ8IWP9 274 aa12.13□□□□□ -0.47
LIMK1-208ENST00000538333 PXT1Q8NFP0 134 aa12.13□□□□□ -0.47
LIMK1-208ENST00000538333 REG4Q9BYZ8 158 aa12.13□□□□□ -0.47
LIMK1-208ENST00000538333 MED9Q9NWA0 146 aa12.13□□□□□ -0.47
LIMK1-208ENST00000538333 SHPKQ9UHJ6 478 aa12.13□□□□□ -0.47
LIMK1-208ENST00000538333 KLF13Q9Y2Y9 288 aaPredicted RBP12.13□□□□□ -0.47
LIMK1-208ENST00000538333 ZNF503-AS2A6NEH8 195 aa12.13□□□□□ -0.47
LIMK1-208ENST00000538333 I3L521 148 aa12.13□□□□□ -0.47
LIMK1-208ENST00000538333 SHOXO15266 292 aa12.13□□□□□ -0.47
LIMK1-208ENST00000538333 RLN2P04090 185 aa12.13□□□□□ -0.47
LIMK1-208ENST00000538333 CRHP06850 196 aa12.13□□□□□ -0.47
LIMK1-208ENST00000538333 CHATP28329 748 aa12.13□□□□□ -0.47
LIMK1-208ENST00000538333 SERPINF1P36955 418 aa12.13□□□□□ -0.47
LIMK1-208ENST00000538333 PDZK1IP1Q13113 114 aa12.13□□□□□ -0.47
LIMK1-208ENST00000538333 SURF2Q15527 256 aaPredicted RBP12.13□□□□□ -0.47
LIMK1-208ENST00000538333 C9orf135Q5VTT2 229 aa12.13□□□□□ -0.47
LIMK1-208ENST00000538333 OR5M9Q8NGP3 310 aa12.13□□□□□ -0.47
LIMK1-208ENST00000538333 FAAP24Q9BTP7 215 aa12.13□□□□□ -0.47
LIMK1-208ENST00000538333 NMES1Q9C002 83 aa12.13□□□□□ -0.47
LIMK1-208ENST00000538333 RDH8Q9NYR8 311 aa12.13□□□□□ -0.47
LIMK1-208ENST00000538333 A0A096LPE4 126 aa12.12□□□□□ -0.47
LIMK1-208ENST00000538333 A0A1W2PPZ6 126 aa12.12□□□□□ -0.47
LIMK1-208ENST00000538333 EEF1E1-BLOC1S5C9J1V9 151 aa12.12□□□□□ -0.47
LIMK1-208ENST00000538333 SPDEFO95238 335 aa12.12□□□□□ -0.47
LIMK1-208ENST00000538333 ZNF250P15622 560 aa12.12□□□□□ -0.47
LIMK1-208ENST00000538333 GLRA1P23415 457 aa12.12□□□□□ -0.47
LIMK1-208ENST00000538333 ANKRD55Q3KP44 614 aa12.12□□□□□ -0.47
LIMK1-208ENST00000538333 ACOT7LQ6ZUV0 252 aa12.12□□□□□ -0.47
LIMK1-208ENST00000538333 MOB3CQ70IA8 216 aa12.12□□□□□ -0.47
LIMK1-208ENST00000538333 IL22RA1Q8N6P7 574 aa12.12□□□□□ -0.47
LIMK1-208ENST00000538333 ZFP62Q8NB50 900 aaPredicted RBP12.12□□□□□ -0.47
LIMK1-208ENST00000538333 COQ8AQ8NI60 647 aa12.12□□□□□ -0.47
LIMK1-208ENST00000538333 PIGCQ92535 297 aa12.12□□□□□ -0.47
LIMK1-208ENST00000538333 CXorf58Q96LI9 332 aa12.12□□□□□ -0.47
LIMK1-208ENST00000538333 TECTBQ96PL2 329 aa12.12□□□□□ -0.47
LIMK1-208ENST00000538333 DMRTA2Q96SC8 542 aa12.12□□□□□ -0.47
LIMK1-208ENST00000538333 DECR2Q9NUI1 292 aa12.12□□□□□ -0.47
LIMK1-208ENST00000538333 AK3Q9UIJ7 227 aa12.12□□□□□ -0.47
LIMK1-208ENST00000538333 TNRC6AQ8NDV7 1962 aaKnown RBP12.12□□□□□ -0.47
LIMK1-208ENST00000538333 hCG_1807616A0A1W2PRN6 198 aa12.12□□□□□ -0.47
LIMK1-208ENST00000538333 HLA-HP01893 362 aa12.12□□□□□ -0.47
LIMK1-208ENST00000538333 SFTPBP07988 381 aa12.12□□□□□ -0.47
LIMK1-208ENST00000538333 UBA52P62987 128 aaKnown RBP12.12□□□□□ -0.47
LIMK1-208ENST00000538333 SLC9A3R2Q15599 337 aa12.12□□□□□ -0.47
LIMK1-208ENST00000538333 C3AR1Q16581 482 aa12.12□□□□□ -0.47
LIMK1-208ENST00000538333 PIGYQ3MUY2 71 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms